JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC5A3_chr21_34068578_34111260	0/0	a0002	718	1	0	1	0	0	0	copy fasta	SLC5A3	chr21	34068578	34111260
SLC5A4_chr22_32213464_32260347	1/1	a0001	659	243	64	65	58	14	40	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	a0002	659	19	0	1	14	0	4	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	a0003	659	17	16	0	1	0	0	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	a0004	138	6	0	4	0	0	2	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	a0005	659	4	4	0	0	0	0	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	a0006	659	4	3	1	0	0	0	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	a0007	266	4	0	0	3	0	1	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	a0008	659	1	0	0	0	0	1	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	a0009	659	1	1	0	0	0	0	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	a0010	659	1	0	0	1	0	0	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	a0011	659	1	0	0	1	0	0	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A4_chr22_32213464_32260347	0/0	a0012	659	1	0	1	0	0	0	copy fasta	SLC5A4	chr22	32213464	32260347
SLC5A5_chr19_17866945_17900174	1/1	a0001	643	404	96	75	169	18	44	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	a0002	643	3	3	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	a0003	643	1	0	0	1	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	a0004	643	1	0	0	0	0	1	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	a0005	643	1	0	0	1	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	a0006	643	1	0	0	0	0	1	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	a0007	643	1	1	0	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	a0008	643	1	0	0	1	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A5_chr19_17866945_17900174	0/0	a0009	643	1	0	1	0	0	0	copy fasta	SLC5A5	chr19	17866945	17900174
SLC5A6_chr2_27194587_27217268	0/0	a0001	635	153	14	27	88	8	16	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	1/1	a0002	635	142	70	34	20	4	12	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	a0003	635	10	0	3	0	1	6	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	a0004	635	2	0	2	0	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	a0005	635	1	0	0	0	1	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	a0006	635	1	0	0	1	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	a0007	635	1	0	0	1	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	a0008	635	1	1	0	0	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A6_chr2_27194587_27217268	0/0	a0009	635	1	1	0	0	0	0	copy fasta	SLC5A6	chr2	27194587	27217268
SLC5A7_chr2_107981524_108018994	1/1	a0001	580	326	96	61	114	10	43	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	a0002	580	47	0	13	29	4	1	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	a0003	580	1	0	0	1	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	a0004	580	1	0	0	1	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A7_chr2_107981524_108018994	0/0	a0005	580	1	0	0	1	0	0	copy fasta	SLC5A7	chr2	107981524	108018994
SLC5A8_chr12_101150493_101215238	0/1	a0001	610	267	68	55	101	13	29	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	a0002	610	88	8	9	62	3	6	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	a0003	610	4	4	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	a0004	610	3	3	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	a0005	610	3	2	0	0	0	1	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	a0006	610	2	2	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	a0007	610	1	0	0	0	0	1	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	a0008	610	1	0	0	1	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	a0009	610	1	0	0	1	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	a0010	610	1	0	0	0	0	1	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	a0011	610	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	a0012	610	1	0	0	1	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	a0013	610	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238
SLC5A8_chr12_101150493_101215238	0/0	a0014	610	1	1	0	0	0	0	copy fasta	SLC5A8	chr12	101150493	101215238