JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC5A9_chr1_48217716_48253638	0/1	a0001	681	296	63	61	137	6	28	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	a0002	681	38	1	2	34	0	1	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	a0003	592	37	12	8	4	5	8	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	a0004	681	10	10	0	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	a0005	681	9	1	4	0	2	2	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	a0006	681	9	0	0	4	0	5	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	a0007	681	4	4	0	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	a0008	681	3	3	0	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	a0009	681	3	0	2	1	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	a0010	681	2	0	0	2	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	a0011	592	1	1	0	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	1/0	a0012	681	1	0	0	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	a0013	279	1	1	0	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	a0014	681	1	0	1	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	a0015	681	1	0	0	0	1	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	a0016	681	1	1	0	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	a0017	681	1	0	0	1	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	a0018	681	1	1	0	0	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC5A9_chr1_48217716_48253638	0/0	a0019	681	1	0	0	1	0	0	copy fasta	SLC5A9	chr1	48217716	48253638
SLC66A1_chr1_19307326_19334300	1/1	a0001	291	426	81	82	208	12	41	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	a0002	291	12	0	4	1	2	5	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	a0003	291	9	8	0	0	0	1	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	a0004	291	5	5	0	0	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	a0005	291	3	0	0	2	0	1	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A1_chr1_19307326_19334300	0/0	a0006	103	1	0	0	1	0	0	copy fasta	SLC66A1	chr1	19307326	19334300
SLC66A2_chr18_79897420_79956653	1/1	a0001	271	349	86	60	143	12	46	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	a0002	271	1	0	1	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	a0003	271	1	0	1	0	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A2_chr18_79897420_79956653	0/0	a0004	271	1	0	0	1	0	0	copy fasta	SLC66A2	chr18	79897420	79956653
SLC66A3_chr2_11150467_11183856	1/1	a0001	202	395	93	84	159	14	43	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	a0002	202	7	0	0	7	0	0	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	a0003	202	1	1	0	0	0	0	copy fasta	SLC66A3	chr2	11150467	11183856
SLC66A3_chr2_11150467_11183856	0/0	a0004	5	1	0	0	0	0	1	copy fasta	SLC66A3	chr2	11150467	11183856
SLC6A11_chr3_10811228_10945714	1/1	a0001	632	345	82	60	153	12	36	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	a0002	632	9	0	0	9	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	a0003	632	2	2	0	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	a0004	632	2	2	0	0	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	a0005	632	2	0	0	2	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	a0006	632	1	0	0	1	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A11_chr3_10811228_10945714	0/0	a0007	632	1	0	0	1	0	0	copy fasta	SLC6A11	chr3	10811228	10945714
SLC6A12_chr12_185081_219157	1/0	a0001	614	222	23	39	129	6	24	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/1	a0002	614	181	55	38	53	10	24	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	a0003	614	9	9	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	a0004	614	2	2	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	a0005	331	1	0	1	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	a0006	614	1	0	1	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	a0007	614	1	0	1	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	a0008	269	1	1	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	a0009	614	1	1	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157
SLC6A12_chr12_185081_219157	0/0	a0010	614	1	1	0	0	0	0	copy fasta	SLC6A12	chr12	185081	219157