JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC6A13_chr12_215622_267836	1/1	a0001	602	405	68	76	199	15	45	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	a0002	602	24	20	4	0	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	a0003	602	7	6	0	0	0	1	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	a0004	510	1	1	0	0	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	a0005	602	1	0	0	1	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	a0006	602	1	1	0	0	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	a0007	602	1	0	0	1	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	a0008	602	1	0	0	1	0	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A13_chr12_215622_267836	0/0	a0009	602	1	0	0	0	1	0	copy fasta	SLC6A13	chr12	215622	267836
SLC6A14_chrX_116431606_116466458	1/1	a0001	642	306	73	46	142	11	32	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	a0002	643	1	0	0	1	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	a0003	642	1	1	0	0	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A15_chr12_84854491_84917799	1/1	a0001	730	210	83	50	29	16	30	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	a0002	730	4	1	2	1	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	a0003	730	3	0	0	3	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	a0004	730	1	0	0	1	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A16_chr19_49284638_49330191	1/1	a0001	736	330	77	58	154	4	35	copy fasta	SLC6A16	chr19	49284638	49330191
SLC6A16_chr19_49284638_49330191	0/0	a0002	736	5	5	0	0	0	0	copy fasta	SLC6A16	chr19	49284638	49330191
SLC6A16_chr19_49284638_49330191	0/0	a0003	736	1	0	0	0	0	1	copy fasta	SLC6A16	chr19	49284638	49330191
SLC6A16_chr19_49284638_49330191	0/0	a0004	736	1	1	0	0	0	0	copy fasta	SLC6A16	chr19	49284638	49330191
SLC6A16_chr19_49284638_49330191	0/0	a0005	736	1	1	0	0	0	0	copy fasta	SLC6A16	chr19	49284638	49330191
SLC6A17_chr1_110145494_110207202	1/1	a0001	727	243	80	47	84	10	20	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	a0002	727	83	3	21	39	8	12	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	a0003	731	1	0	0	1	0	0	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	a0004	727	1	1	0	0	0	0	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A18_chr5_1220381_1251189	0/0	a0001	318	124	25	29	46	6	18	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/1	a0002	628	95	2	15	69	3	5	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0003	628	70	41	12	2	1	14	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	1/0	a0004	628	57	0	4	47	1	4	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0005	628	22	3	3	9	6	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0006	318	18	2	3	11	1	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0007	318	17	0	7	9	0	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0008	318	9	0	2	7	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0009	628	8	0	6	1	0	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0010	318	7	6	1	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0011	628	6	6	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0012	628	5	1	2	1	0	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0013	318	4	0	2	2	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0014	628	3	3	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0015	318	2	0	2	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0016	628	1	1	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0017	628	1	0	0	0	0	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0018	628	1	1	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0019	628	1	0	0	0	0	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0020	628	1	1	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0021	622	1	1	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0022	628	1	0	0	0	0	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0023	628	1	1	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	a0024	628	1	0	0	0	0	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A19_chr5_1196595_1230111	1/1	a0001	634	358	62	76	169	10	39	copy fasta	SLC6A19	chr5	1196595	1230111