JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC6A19_chr5_1196595_1230111	0/0	a0002	634	81	29	7	36	2	7	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	a0003	634	5	0	0	4	0	1	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	a0004	634	2	0	0	2	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	a0005	634	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	a0006	634	1	0	1	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	a0007	634	1	0	0	0	1	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	a0008	634	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	a0009	634	1	0	0	0	1	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	a0010	634	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	a0011	634	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	a0012	634	1	0	0	0	0	1	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	a0013	634	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	a0014	634	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	a0015	634	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	a0016	634	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A1_chr3_10987748_11044247	1/1	a0001	599	432	96	63	213	12	46	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	a0002	599	3	2	1	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	a0003	599	2	0	2	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	a0004	599	1	0	0	1	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A20_chr3_45750449_45801536	1/0	a0001	592	350	87	65	145	12	40	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	a0002	592	37	2	8	20	3	4	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/1	a0003	592	6	0	3	1	1	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	a0004	592	3	0	0	3	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	a0005	592	1	0	0	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	a0006	592	1	1	0	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A2_chr16_55650988_55711192	1/1	a0001	617	389	86	71	174	14	42	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	a0002	617	3	0	2	0	0	1	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	a0003	617	2	2	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	a0004	617	2	0	0	1	0	1	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	a0005	617	1	0	0	1	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	a0006	617	1	0	1	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A3_chr5_1387794_1450440	0/1	a0001	620	371	94	72	142	16	46	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	a0002	620	1	0	0	1	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	a0003	620	1	0	0	1	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A4_chr17_30189319_30240697	1/1	a0001	630	274	91	60	66	13	42	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	a0002	630	8	0	0	8	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	a0003	630	2	2	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	a0004	630	1	0	0	0	1	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	a0005	630	1	1	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A5_chr11_20594608_20664285	0/0	a0001	797	125	30	25	49	7	14	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0002	797	113	28	18	45	5	17	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0003	797	27	2	8	16	0	1	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/1	a0004	797	27	1	6	13	1	5	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0005	797	13	1	6	1	3	2	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0006	797	7	4	3	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0007	797	7	7	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0008	797	5	1	4	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0009	797	4	4	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0010	797	4	3	1	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	1/0	a0011	797	3	2	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285