JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC7A3_chrX_70920579_70936096	0/0	a0010	619	1	1	0	0	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	a0011	138	1	0	0	1	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A4_chr22_21023718_21037561	1/1	a0001	635	273	62	57	106	18	28	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	a0002	635	153	27	24	86	0	16	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	a0003	635	5	4	1	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	a0004	635	3	3	0	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	a0005	635	2	0	0	0	0	2	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	a0006	635	1	1	0	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	a0007	635	1	0	0	1	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	a0008	635	1	0	1	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	a0009	635	1	1	0	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	a0010	635	1	0	0	1	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	a0011	635	1	0	1	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A5_chr16_87825023_87874507	1/1	a0001	507	375	83	78	146	18	48	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	a0002	507	5	5	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	a0003	507	3	3	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	a0004	507	3	3	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	a0005	507	1	0	0	1	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	a0006	507	1	0	1	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	a0007	507	1	0	0	1	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	a0008	507	1	0	1	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A6OS_chr16_68293034_68315946	0/0	a0001	309	210	66	43	65	8	28	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	1/0	a0002	309	63	8	18	26	2	8	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	a0003	309	37	15	5	9	2	6	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/1	a0004	309	11	0	6	0	4	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	a0005	309	2	2	0	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	a0006	309	2	2	0	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	a0007	309	1	0	1	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	a0008	309	1	1	0	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	a0009	309	1	0	1	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6_chr16_68259526_68306819	1/1	a0001	515	266	72	58	86	10	38	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	a0002	515	11	11	0	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	a0003	515	2	2	0	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	a0004	515	1	0	1	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	a0005	515	1	0	1	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	a0006	515	1	1	0	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A7_chr14_22768222_22820435	1/1	a0001	511	400	96	74	169	13	46	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	a0002	511	1	0	0	1	0	0	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	a0003	511	1	0	0	0	1	0	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A8_chr14_23120295_23188660	1/1	a0001	535	383	97	63	171	12	38	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	a0002	535	2	0	2	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	a0003	535	2	2	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	a0004	535	1	0	0	0	0	1	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	a0005	535	1	0	0	0	0	1	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	a0006	535	1	0	1	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	a0007	535	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	a0008	535	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A9_chr19_32825511_32874767	1/1	a0001	487	264	56	46	109	13	38	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	a0002	487	122	29	12	65	5	11	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	a0003	487	5	4	1	0	0	0	copy fasta	SLC7A9	chr19	32825511	32874767