JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AXIN1_chr16_282440_357723	0/0	a0009	862	1	0	0	0	0	1	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	a0010	862	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	a0011	862	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN2_chr17_65523563_65566648	1/0	a0001	843	255	63	37	123	8	23	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/1	a0002	843	122	8	37	46	6	24	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	a0003	839	6	6	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	a0004	843	3	3	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	a0005	843	3	0	0	3	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	a0006	843	2	2	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	a0007	843	2	1	0	0	0	1	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	a0008	843	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	a0009	843	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	a0010	843	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	a0011	843	1	0	0	1	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	a0012	843	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	a0013	843	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	a0014	843	1	0	0	1	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	a0015	839	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	a0016	839	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXL_chr19_41214223_41266766	1/1	a0001	894	304	90	60	108	10	34	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	a0002	894	4	0	0	4	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	a0003	894	1	0	0	1	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	a0004	894	1	0	0	1	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	a0005	894	1	0	1	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	a0006	894	1	0	1	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	a0007	894	1	1	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	a0008	894	1	1	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AZGP1_chr7_99961730_99981031	0/0	a0000	0	2	0	0	2	0	0	copy fasta	AZGP1	chr7	99961730	99981031
AZGP1_chr7_99961730_99981031	1/1	a0001	298	419	95	75	183	18	46	copy fasta	AZGP1	chr7	99961730	99981031
AZGP1_chr7_99961730_99981031	0/0	a0002	54	7	0	1	6	0	0	copy fasta	AZGP1	chr7	99961730	99981031
AZGP1_chr7_99961730_99981031	0/0	a0003	298	2	0	0	2	0	0	copy fasta	AZGP1	chr7	99961730	99981031
AZGP1_chr7_99961730_99981031	0/0	a0004	298	1	0	0	1	0	0	copy fasta	AZGP1	chr7	99961730	99981031
AZGP1_chr7_99961730_99981031	0/0	a0005	298	1	1	0	0	0	0	copy fasta	AZGP1	chr7	99961730	99981031
AZI2_chr3_28316047_28353824	1/1	a0001	392	359	89	68	146	14	40	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	a0002	392	1	1	0	0	0	0	copy fasta	AZI2	chr3	28316047	28353824
AZIN1_chr8_102821308_102869163	1/1	a0001	448	377	91	67	161	14	42	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	a0002	448	1	0	0	1	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	a0003	448	1	1	0	0	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	a0004	448	1	0	1	0	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN2_chr1_33076153_33128492	1/1	a0001	460	273	76	48	108	10	29	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	a0002	460	16	0	13	3	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	a0003	460	15	0	4	11	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	a0004	460	12	11	1	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	a0005	460	3	3	0	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	a0006	460	1	1	0	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	a0007	460	1	1	0	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	a0008	460	1	0	0	0	0	1	copy fasta	AZIN2	chr1	33076153	33128492
AZU1_chr19_822837_837018	0/1	a0001	251	371	88	71	159	15	37	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	a0002	251	11	1	2	2	1	5	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	a0003	251	3	3	0	0	0	0	copy fasta	AZU1	chr19	822837	837018