JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC7A9_chr19_32825511_32874767	0/0	a0004	487	5	0	0	5	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	a0005	487	1	0	1	0	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	a0006	487	1	1	0	0	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	a0007	487	1	1	0	0	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	a0008	487	1	0	0	1	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	a0009	487	1	0	0	1	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	a0010	487	1	0	0	0	0	1	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	a0011	487	1	0	0	1	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	a0012	487	1	1	0	0	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC8A1_chr2_40092270_40457090	1/1	a0001	973	233	90	43	76	6	16	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	a0002	973	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	a0003	973	1	0	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	a0004	973	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A2_chr19_47423017_47476893	1/1	a0001	921	315	86	68	107	14	38	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	a0002	921	1	0	0	1	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A3_chr14_70039215_70193951	1/1	a0001	921	286	86	50	100	14	34	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	a0002	921	1	1	0	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	a0003	921	1	1	0	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	a0004	921	1	0	1	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	a0005	921	1	0	0	0	1	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	a0006	921	1	0	0	1	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	a0007	921	1	1	0	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	a0008	921	1	0	1	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	a0009	921	1	0	0	1	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	a0010	921	1	1	0	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	a0011	921	1	0	0	0	1	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8B1_chr12_113293771_113340109	1/1	a0001	584	208	71	33	61	12	29	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	a0002	584	67	15	2	45	0	5	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	a0003	584	3	0	1	2	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	a0004	584	3	3	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	a0005	584	1	1	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	a0006	584	1	1	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	a0007	584	1	1	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC9A1_chr1_27093809_27160125	1/1	a0001	815	232	77	46	56	14	37	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	a0002	815	1	1	0	0	0	0	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	a0003	815	1	0	0	0	0	1	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A2_chr2_102614553_102716355	1/1	a0001	812	340	87	63	136	10	42	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	a0002	812	2	0	2	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	a0003	812	1	1	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	a0004	812	1	0	1	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A3_chr5_465456_529449	0/1	a0001	834	134	47	26	45	6	9	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	1/0	a0002	834	72	7	15	41	3	5	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	a0003	834	3	3	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	a0004	834	2	2	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	a0005	834	2	0	0	2	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	a0006	834	1	0	0	0	1	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	a0007	834	1	0	1	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	a0008	834	1	0	0	1	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	a0009	834	1	0	0	1	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	a0010	834	1	1	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449