JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC9A4_chr2_102468226_102538972	0/0	a0001	798	225	60	39	91	7	28	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	1/0	a0002	798	135	29	22	67	5	11	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	a0003	798	7	0	0	7	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/1	a0004	798	4	0	2	0	0	1	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	a0005	798	2	2	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	a0006	798	2	0	0	0	0	2	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	a0007	798	2	2	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	a0008	798	1	0	0	1	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	a0009	798	1	0	0	0	0	1	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	a0010	798	1	1	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	a0011	798	1	0	1	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	a0012	798	1	0	0	0	0	1	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A5_chr16_67243979_67277191	1/1	a0001	896	198	77	35	39	11	34	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	a0002	896	1	0	0	0	1	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	a0003	896	1	1	0	0	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	a0004	896	1	1	0	0	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	a0005	896	1	1	0	0	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	a0006	896	1	0	1	0	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	a0007	896	1	0	0	1	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A6_chrX_135980435_136052269	1/1	a0001	679	197	46	33	89	5	22	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A6_chrX_135980435_136052269	0/0	a0002	146	1	0	0	1	0	0	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A6_chrX_135980435_136052269	0/0	a0003	679	1	0	0	1	0	0	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A7_chrX_46594251_46764118	1/1	a0001	726	244	60	51	94	9	28	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	a0002	126	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	a0003	384	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	a0004	643	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	a0005	726	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	a0006	726	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	a0007	59	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A8_chr20_49807828_49897242	1/1	a0001	581	355	89	59	170	12	23	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	a0002	577	3	0	1	0	2	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	a0003	581	1	0	0	0	0	1	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	a0004	581	1	1	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A9_chr3_143260222_143853468	1/1	a0001	645	103	54	20	19	0	8	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	a0002	645	3	0	0	1	0	2	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	a0003	645	2	2	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9B1_chr4_102895928_103024705	0/1	a0001	515	315	80	52	136	12	34	copy fasta	SLC9B1	chr4	102895928	103024705
SLC9B1_chr4_102895928_103024705	0/0	a0002	515	2	2	0	0	0	0	copy fasta	SLC9B1	chr4	102895928	103024705
SLC9B1_chr4_102895928_103024705	1/0	a0003	515	1	0	0	0	0	0	copy fasta	SLC9B1	chr4	102895928	103024705
SLC9B2_chr4_103017253_103081761	1/1	a0001	537	286	77	48	122	11	26	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	a0002	537	59	5	15	28	1	10	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	a0003	537	3	3	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	a0004	537	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	a0005	537	1	0	1	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	a0006	537	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	a0007	537	1	0	0	1	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	a0008	537	1	0	0	1	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	a0009	537	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	a0010	537	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	a0011	537	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761