JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC9C1_chr3_112135898_112299216	0/0	a0001	1177	107	10	18	59	3	17	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	a0002	1177	98	22	20	42	6	8	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	a0003	1177	75	16	10	41	2	6	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	1/1	a0004	1177	50	28	14	1	4	1	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	a0005	1177	11	0	7	0	1	3	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	a0006	1177	6	2	0	4	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	a0007	1177	5	4	1	0	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	a0008	1177	5	0	3	0	2	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	a0009	1177	3	3	0	0	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	a0010	1177	2	2	0	0	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	a0011	1177	2	0	0	0	0	2	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	a0012	1177	2	2	0	0	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	a0013	1177	2	0	0	1	0	1	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	a0014	1177	1	1	0	0	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	a0015	1177	1	0	0	1	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	a0016	1177	1	0	1	0	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	a0017	1177	1	0	0	1	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C2_chr1_173495460_173608072	1/1	a0001	1124	172	47	35	64	11	13	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	a0002	1124	109	9	23	58	3	16	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	a0003	1124	15	14	1	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	a0004	1124	6	6	0	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	a0005	1124	6	6	0	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	a0006	1124	3	0	3	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	a0007	1124	2	0	0	2	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	a0008	1124	1	1	0	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	a0009	1124	1	1	0	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	a0010	1124	1	0	0	0	0	1	copy fasta	SLC9C2	chr1	173495460	173608072
SLCO1A2_chr12_21259600_21339917	1/1	a0001	670	287	82	44	131	9	19	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	a0002	670	10	0	3	0	1	6	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	a0003	670	4	4	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	a0004	670	3	0	3	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	a0005	670	1	0	0	1	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	a0006	670	1	0	0	1	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	a0007	670	1	0	0	0	0	1	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	a0008	670	1	1	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	a0009	670	1	1	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	a0010	670	1	0	0	1	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1B1_chr12_21126194_21244796	0/0	a0001	691	159	49	11	87	0	12	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	1/1	a0002	691	84	13	20	35	4	10	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	a0003	691	27	1	7	19	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	a0004	691	13	7	4	1	1	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	a0005	691	11	4	2	0	3	2	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	a0006	691	5	5	0	0	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	a0007	691	4	4	0	0	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	a0008	691	2	0	0	2	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	a0009	691	2	0	0	2	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	a0010	691	2	0	0	2	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	a0011	691	1	1	0	0	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	a0012	691	1	0	0	1	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	a0013	691	1	0	0	1	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796