JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLCO1B1_chr12_21126194_21244796	0/0	a0014	691	1	0	0	1	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	a0015	691	1	0	0	0	0	1	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	a0016	691	1	0	1	0	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	a0017	579	1	0	0	1	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	a0018	691	1	0	0	0	0	1	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	a0019	691	1	0	1	0	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B3_chr12_20805705_20921911	0/1	a0001	702	134	19	29	64	4	17	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	1/0	a0002	702	117	54	13	45	0	4	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	a0003	702	14	1	7	0	2	4	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	a0004	702	5	5	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	a0005	702	3	3	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	a0006	702	1	0	1	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	a0007	702	1	0	0	0	0	1	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	a0008	702	1	0	0	1	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	a0009	702	1	0	0	1	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	a0010	702	1	1	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	a0011	702	1	0	0	1	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	a0012	702	1	1	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	a0013	702	1	1	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	a0014	702	1	1	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	a0015	702	1	1	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	a0016	702	1	1	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1C1_chr12_20690332_20758386	1/1	a0001	712	283	88	54	95	9	35	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	a0002	712	7	0	6	0	1	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	a0003	712	3	0	2	1	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	a0004	712	2	2	0	0	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	a0005	712	1	0	0	0	0	1	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO2A1_chr3_133927701_134034925	1/1	a0001	643	219	37	38	108	8	26	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	a0002	643	115	44	16	44	2	9	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	a0003	643	2	0	2	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	a0004	643	1	0	0	1	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	a0005	643	1	0	0	0	0	1	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	a0006	643	1	0	0	1	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	a0007	643	1	1	0	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	a0008	643	1	1	0	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	a0009	643	1	1	0	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2B1_chr11_75146107_75211549	1/1	a0001	709	182	56	32	46	11	35	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	a0002	709	65	28	6	30	0	1	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	a0003	709	63	8	20	23	4	8	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	a0004	709	22	2	0	19	0	1	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	a0005	706	20	0	3	13	1	3	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	a0006	706	9	0	0	8	0	1	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	a0007	706	5	0	0	5	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	a0008	706	2	0	0	2	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	a0009	709	1	1	0	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	a0010	709	1	0	1	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	a0011	709	1	0	0	0	0	1	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	a0012	709	1	1	0	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO3A1_chr15_91848708_92170903	0/1	a0001	710	169	61	43	37	8	19	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	1/0	a0002	710	18	9	4	1	0	3	copy fasta	SLCO3A1	chr15	91848708	92170903