JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLCO3A1_chr15_91848708_92170903	0/0	a0003	710	1	0	0	1	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	a0004	710	1	0	1	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	a0005	710	1	0	0	1	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO4A1_chr20_62637503_62677293	1/1	a0001	722	345	89	59	152	8	35	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	a0002	722	52	0	8	30	5	9	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	a0003	722	7	2	5	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	a0004	722	6	0	4	2	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	a0005	722	5	3	2	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	a0006	722	3	2	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	a0007	722	1	0	0	0	1	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	a0008	722	1	0	1	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	a0009	603	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	a0010	722	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	a0011	722	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	a0012	722	1	0	0	0	0	1	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	a0013	722	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	a0014	722	1	1	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	a0015	734	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	a0016	722	1	0	1	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	a0017	722	1	1	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	a0018	722	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	a0019	722	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	a0020	722	1	0	0	0	0	1	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4C1_chr5_102228986_102301284	1/1	a0001	724	325	76	55	145	8	39	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	a0002	724	18	2	2	11	2	1	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	a0003	724	4	4	0	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	a0004	724	4	3	1	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	a0005	724	1	0	0	1	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	a0006	724	1	1	0	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	a0007	724	1	0	0	1	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO5A1_chr8_69662046_69839978	1/1	a0001	848	145	21	36	60	3	23	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	a0002	848	112	52	18	31	4	7	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	a0003	848	3	3	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	a0004	848	3	0	0	3	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	a0005	848	3	3	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	a0006	848	3	0	1	0	0	2	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	a0007	848	2	0	0	2	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	a0008	848	2	0	0	2	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	a0009	848	1	0	0	0	1	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	a0010	848	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	a0011	848	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	a0012	848	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	a0013	848	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	a0014	848	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	a0015	848	1	0	1	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO6A1_chr5_102366774_102504001	1/0	a0001	719	229	52	36	104	8	28	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	a0002	719	74	17	12	30	5	10	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	a0003	719	22	8	8	3	1	2	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	a0004	719	5	4	1	0	0	0	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	a0005	719	4	0	0	4	0	0	copy fasta	SLCO6A1	chr5	102366774	102504001