JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLCO6A1_chr5_102366774_102504001	0/1	a0006	719	4	0	3	0	0	0	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	a0007	719	2	2	0	0	0	0	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	a0008	719	1	0	0	1	0	0	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	a0009	719	1	1	0	0	0	0	copy fasta	SLCO6A1	chr5	102366774	102504001
SLF1_chr5_94613669_94702621	1/1	a0001	1058	255	65	36	115	8	29	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	a0002	1058	102	15	17	57	4	9	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	a0003	1058	2	2	0	0	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	a0004	89	1	0	1	0	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	a0005	1058	1	0	0	1	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	a0006	1058	1	0	0	0	0	1	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	a0007	1058	1	0	0	0	0	1	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	a0008	1058	1	0	0	1	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF2_chr10_100907963_100970134	1/1	a0001	1173	248	69	37	114	7	19	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	a0002	1173	70	16	23	9	7	15	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	a0003	1173	2	2	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	a0004	1173	2	0	2	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	a0005	1173	2	2	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	a0006	1173	1	0	0	0	0	1	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	a0007	1173	1	1	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	a0008	1173	1	1	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	a0009	1173	1	0	0	1	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	a0010	1173	1	0	0	0	0	1	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	a0011	1173	1	1	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLFN11_chr17_35345305_35378621	0/1	a0001	901	177	8	26	109	6	27	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0002	901	117	25	13	64	2	13	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0003	901	59	26	13	17	1	2	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0004	901	22	8	8	0	5	1	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0005	901	13	0	8	2	0	3	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0006	901	12	0	0	12	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0007	901	9	9	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0008	901	8	7	0	0	0	1	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0009	901	7	0	0	7	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0010	901	4	0	0	4	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0011	901	4	0	0	0	1	3	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	1/0	a0012	901	4	2	0	1	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0013	901	3	2	1	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0014	901	3	0	0	3	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0015	901	3	0	0	3	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0016	901	2	0	2	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0017	901	2	0	0	2	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0018	901	2	2	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0019	901	2	2	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0020	901	2	0	0	2	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0021	901	1	0	0	1	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0022	901	1	0	1	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0023	901	1	0	0	1	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0024	901	1	0	1	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0025	901	1	0	0	1	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0026	901	1	1	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	a0027	901	1	1	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621