JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLIT3_chr5_168656740_169306139	0/0	a0015	1523	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLITRK1_chr13_83872205_83887474	1/1	a0001	696	395	89	62	192	12	38	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	a0002	696	5	0	0	5	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	a0003	696	2	0	2	0	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	a0004	696	1	1	0	0	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	a0005	696	1	0	0	1	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK2_chrX_145812829_145834856	1/1	a0001	845	269	75	46	102	13	31	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	a0002	845	54	0	8	44	0	2	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	a0003	217	1	0	0	1	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	a0004	845	1	0	0	0	0	1	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	a0005	674	1	0	0	1	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK3_chr3_165181720_165201384	1/1	a0001	977	363	92	77	142	14	36	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	a0002	977	45	0	3	36	0	6	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	a0003	977	2	0	2	0	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	a0004	977	2	0	2	0	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	a0005	977	1	0	0	1	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	a0006	977	1	0	0	1	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK4_chrX_143617790_143641101	1/1	a0001	837	330	74	58	151	13	32	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	a0002	837	1	1	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	a0003	837	1	1	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	a0004	837	1	1	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	a0005	542	1	0	1	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	a0006	837	1	1	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK5_chr13_87666371_87684616	1/1	a0001	958	388	87	73	167	18	41	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	a0002	958	4	0	0	4	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	a0003	958	2	2	0	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	a0004	958	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	a0005	958	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	a0006	958	1	1	0	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	a0007	958	1	1	0	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	a0008	958	1	0	0	0	0	1	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	a0009	958	1	1	0	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	a0010	958	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	a0011	958	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	a0012	958	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	a0013	958	1	0	1	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK6_chr13_85787790_85804419	1/1	a0001	841	379	58	69	195	14	41	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	a0002	841	36	30	2	4	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	a0003	841	7	3	4	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	a0004	841	3	0	0	3	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	a0005	841	1	1	0	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	a0006	841	1	0	0	0	0	1	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	a0007	841	1	0	0	1	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	a0008	841	1	0	0	0	0	1	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	a0009	841	1	0	0	0	0	1	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	a0010	841	1	0	0	1	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	a0011	841	1	0	1	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLK_chr10_103962140_104034233	1/1	a0001	1235	197	48	26	91	11	19	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	a0002	1235	88	34	16	31	1	6	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	a0003	1235	69	6	15	35	3	10	copy fasta	SLK	chr10	103962140	104034233