JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AZU1_chr19_822837_837018	0/0	a0004	251	1	0	0	1	0	0	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	a0005	251	1	0	1	0	0	0	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	a0006	209	1	0	0	1	0	0	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	a0007	250	1	0	1	0	0	0	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	a0008	251	1	0	0	1	0	0	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	a0009	251	1	0	1	0	0	0	copy fasta	AZU1	chr19	822837	837018
B2M_chr15_44706517_44723145	0/1	a0001	119	385	86	78	156	16	48	copy fasta	B2M	chr15	44706517	44723145
B3GALNT1_chr3_161078883_161110349	1/1	a0001	331	368	92	68	163	12	31	copy fasta	B3GALNT1	chr3	161078883	161110349
B3GALNT1_chr3_161078883_161110349	0/0	a0002	331	32	0	8	17	0	7	copy fasta	B3GALNT1	chr3	161078883	161110349
B3GALNT2_chr1_235442190_235509452	1/1	a0001	500	334	83	64	139	8	38	copy fasta	B3GALNT2	chr1	235442190	235509452
B3GALNT2_chr1_235442190_235509452	0/0	a0002	500	7	7	0	0	0	0	copy fasta	B3GALNT2	chr1	235442190	235509452
B3GALNT2_chr1_235442190_235509452	0/0	a0003	500	2	0	2	0	0	0	copy fasta	B3GALNT2	chr1	235442190	235509452
B3GALNT2_chr1_235442190_235509452	0/0	a0004	500	1	0	0	1	0	0	copy fasta	B3GALNT2	chr1	235442190	235509452
B3GALT1_chr2_167288001_167879045	1/1	a0001	326	118	50	22	26	2	16	copy fasta	B3GALT1	chr2	167288001	167879045
B3GALT2_chr1_193173730_193191613	1/1	a0001	422	395	94	78	173	14	34	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	a0002	422	2	0	0	2	0	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT2_chr1_193173730_193191613	0/0	a0003	422	1	0	0	1	0	0	copy fasta	B3GALT2	chr1	193173730	193191613
B3GALT4_chr6_33272123_33283825	0/1	a0001	378	362	96	72	148	14	31	copy fasta	B3GALT4	chr6	33272123	33283825
B3GALT4_chr6_33272123_33283825	0/0	a0002	378	1	0	0	0	0	1	copy fasta	B3GALT4	chr6	33272123	33283825
B3GALT5_chr21_39607940_39678137	0/1	a0001	310	200	38	44	78	11	28	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	1/0	a0002	310	133	49	18	50	5	10	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	a0003	310	2	2	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT5_chr21_39607940_39678137	0/0	a0004	310	1	1	0	0	0	0	copy fasta	B3GALT5	chr21	39607940	39678137
B3GALT6_chr1_1227237_1240041	1/1	a0001	329	324	68	62	146	13	33	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	a0002	329	32	21	4	3	1	3	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	a0003	334	3	3	0	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	a0004	329	2	2	0	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	a0005	329	1	1	0	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	a0006	329	1	0	0	1	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	a0007	329	1	0	0	0	0	1	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	a0008	329	1	0	0	0	0	1	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT6_chr1_1227237_1240041	0/0	a0009	329	1	1	0	0	0	0	copy fasta	B3GALT6	chr1	1227237	1240041
B3GALT9_chr9_120788467_120806787	1/1	a0001	369	360	76	57	196	11	18	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	a0002	369	33	7	11	8	3	4	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	a0003	369	3	3	0	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	a0004	369	2	2	0	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	a0005	369	2	0	0	2	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	a0006	369	1	0	1	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	a0007	369	1	1	0	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	a0008	369	1	1	0	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	a0009	369	1	0	1	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GAT1_chr11_134373508_134417242	1/1	a0001	334	334	79	74	121	18	40	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	a0002	334	17	15	2	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	a0003	334	1	0	0	1	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT2_chr6_70851679_70962060	1/1	a0001	323	315	86	54	128	8	37	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	a0002	323	1	0	0	0	0	1	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT3_chr11_62610296_62626986	1/1	a0001	335	287	91	69	81	14	30	copy fasta	B3GAT3	chr11	62610296	62626986
B3GAT3_chr11_62610296_62626986	0/0	a0002	335	1	0	1	0	0	0	copy fasta	B3GAT3	chr11	62610296	62626986
B3GAT3_chr11_62610296_62626986	0/0	a0003	335	1	0	0	1	0	0	copy fasta	B3GAT3	chr11	62610296	62626986
B3GAT3_chr11_62610296_62626986	0/0	a0004	335	1	1	0	0	0	0	copy fasta	B3GAT3	chr11	62610296	62626986