JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLX4IP_chr20_10430305_10633030	0/0	a0007	408	1	1	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	a0008	408	1	0	0	0	0	1	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4_chr16_3576181_3616606	1/1	a0001	1834	209	30	43	95	6	33	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0002	1834	54	32	6	12	1	3	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0003	1834	36	0	3	31	1	1	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0004	1834	20	0	5	10	2	3	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0005	1834	6	6	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0006	1267	6	0	2	3	1	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0007	1834	6	0	5	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0008	1834	5	0	0	5	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0009	1834	3	3	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0010	1267	3	2	0	0	0	1	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0011	1833	3	0	0	3	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0012	1834	3	3	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0013	1834	3	2	0	0	0	1	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0014	1834	2	2	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0015	1834	2	2	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0016	1834	2	2	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0017	1834	2	0	2	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0018	1834	2	2	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0019	1834	2	2	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0020	1834	2	2	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0021	1834	1	0	0	0	1	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0022	1834	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0023	1267	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0024	1834	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0025	1834	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0026	1834	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0027	1834	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0028	1834	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0029	1834	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0030	1834	1	0	0	0	0	1	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0031	1834	1	0	0	0	0	1	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0032	1834	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0033	1834	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0034	1266	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0035	1834	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0036	1834	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0037	1732	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0038	1834	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0039	1834	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0040	1834	1	0	0	0	0	1	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0041	1834	1	0	0	0	0	1	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0042	1834	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0043	1834	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0044	1834	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	a0045	1834	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX9_chr21_44935029_44981973	1/1	a0001	230	273	37	51	128	17	38	copy fasta	SLX9	chr21	44935029	44981973
SLX9_chr21_44935029_44981973	0/0	a0002	230	26	3	1	20	1	1	copy fasta	SLX9	chr21	44935029	44981973
SLX9_chr21_44935029_44981973	0/0	a0003	230	20	13	6	0	0	1	copy fasta	SLX9	chr21	44935029	44981973