JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLX9_chr21_44935029_44981973	0/0	a0004	230	13	2	8	2	0	1	copy fasta	SLX9	chr21	44935029	44981973
SLX9_chr21_44935029_44981973	0/0	a0005	215	1	0	0	0	0	1	copy fasta	SLX9	chr21	44935029	44981973
SLX9_chr21_44935029_44981973	0/0	a0006	230	1	1	0	0	0	0	copy fasta	SLX9	chr21	44935029	44981973
SMAD1_chr4_145476853_145564176	1/1	a0001	465	307	90	56	111	12	36	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	a0002	465	1	0	0	1	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD2_chr18_47803957_47935659	1/1	a0001	467	310	76	60	136	10	26	copy fasta	SMAD2	chr18	47803957	47935659
SMAD3_chr15_67060602_67200169	1/1	a0001	425	308	88	58	108	10	42	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	a0002	425	2	0	2	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD4_chr18_51025213_51090042	1/1	a0001	552	300	79	65	120	8	26	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	a0002	552	1	0	1	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	a0003	552	1	1	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD5_chr5_136127845_136187733	1/1	a0001	465	294	80	46	132	14	20	copy fasta	SMAD5	chr5	136127845	136187733
SMAD6_chr15_66697236_66787849	1/1	a0001	496	321	80	54	133	16	36	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	a0002	496	3	0	3	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	a0003	496	3	0	0	3	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	a0004	496	2	0	1	1	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	a0005	496	2	0	0	2	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	a0006	15	1	0	0	1	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	a0007	496	1	0	0	1	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	a0008	496	1	0	0	1	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	a0009	496	1	1	0	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	a0010	496	1	1	0	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD7_chr18_48914853_48955965	1/1	a0001	426	395	96	72	161	18	46	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	a0002	426	2	0	2	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	a0003	426	1	0	0	1	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD9_chr13_36839831_36925238	1/1	a0001	467	354	82	66	156	6	42	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	a0002	467	2	0	1	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	a0003	467	1	0	1	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	a0004	467	1	0	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAGP_chr12_51239558_51275415	1/1	a0001	97	409	100	74	179	14	40	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	a0002	97	1	0	0	1	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAP1_chr6_70662883_70867003	1/1	a0001	467	217	52	44	75	11	33	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	a0002	467	85	23	8	51	1	2	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	a0003	467	1	0	0	0	0	1	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	a0004	291	1	1	0	0	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	a0005	467	1	0	0	1	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	a0006	467	1	0	0	1	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP2_chr1_40368727_40428322	1/1	a0001	429	394	88	60	188	16	40	copy fasta	SMAP2	chr1	40368727	40428322
SMAP2_chr1_40368727_40428322	0/0	a0002	429	4	4	0	0	0	0	copy fasta	SMAP2	chr1	40368727	40428322
SMAP2_chr1_40368727_40428322	0/0	a0003	429	2	0	0	2	0	0	copy fasta	SMAP2	chr1	40368727	40428322
SMARCA1_chrX_129441506_129528490	1/1	a0001	1070	272	66	46	132	4	22	copy fasta	SMARCA1	chrX	129441506	129528490
SMARCA1_chrX_129441506_129528490	0/0	a0002	1070	2	2	0	0	0	0	copy fasta	SMARCA1	chrX	129441506	129528490
SMARCA1_chrX_129441506_129528490	0/0	a0003	70	1	0	0	1	0	0	copy fasta	SMARCA1	chrX	129441506	129528490
SMARCA1_chrX_129441506_129528490	0/0	a0004	1070	1	0	0	0	1	0	copy fasta	SMARCA1	chrX	129441506	129528490
SMARCA1_chrX_129441506_129528490	0/0	a0005	892	1	0	0	1	0	0	copy fasta	SMARCA1	chrX	129441506	129528490
SMARCA1_chrX_129441506_129528490	0/0	a0006	477	1	0	0	1	0	0	copy fasta	SMARCA1	chrX	129441506	129528490
SMARCA1_chrX_129441506_129528490	0/0	a0007	86	1	0	0	1	0	0	copy fasta	SMARCA1	chrX	129441506	129528490
SMARCA2_chr9_2010347_2198620	1/0	a0001	1590	130	26	28	54	10	11	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0002	1589	86	20	9	50	2	5	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/1	a0003	1590	40	15	12	8	1	3	copy fasta	SMARCA2	chr9	2010347	2198620