JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SMARCA2_chr9_2010347_2198620	0/0	a0004	1589	17	8	2	6	0	1	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0005	886	8	3	4	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0006	1591	5	2	2	0	0	1	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0007	1590	4	0	2	1	1	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0008	1591	4	2	1	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0009	1593	4	2	0	0	0	2	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0010	1584	2	1	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0011	1590	2	0	0	2	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0012	1592	2	1	1	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0013	1589	1	0	1	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0014	1589	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0015	1589	1	0	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0016	1589	1	0	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0017	1589	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0018	1590	1	0	0	0	0	1	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0019	1590	1	0	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0020	1590	1	0	1	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0021	887	1	0	1	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0022	1592	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0023	1593	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	a0024	1590	1	0	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA4_chr19_10956030_11067273	1/1	a0001	1647	282	69	47	117	9	38	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	a0002	1647	2	0	1	0	1	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	a0003	1647	1	0	0	1	0	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	a0004	1647	1	1	0	0	0	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA5_chr4_143508702_143562486	1/1	a0001	1052	368	80	65	171	14	36	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	a0002	1052	1	0	1	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	a0003	1052	1	0	0	1	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCAD1_chr4_94202865_94296292	0/1	a0001	1026	147	17	24	86	4	15	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	0/0	a0002	1026	90	67	15	1	4	3	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	1/0	a0003	1026	81	3	12	43	6	16	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	0/0	a0004	1026	2	2	0	0	0	0	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	0/0	a0005	1026	1	0	1	0	0	0	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	0/0	a0006	1026	1	1	0	0	0	0	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAL1_chr2_216407484_216488053	1/1	a0001	954	325	69	53	155	15	31	copy fasta	SMARCAL1	chr2	216407484	216488053
SMARCAL1_chr2_216407484_216488053	0/0	a0002	954	38	3	0	32	1	2	copy fasta	SMARCAL1	chr2	216407484	216488053
SMARCAL1_chr2_216407484_216488053	0/0	a0003	954	16	10	5	0	0	1	copy fasta	SMARCAL1	chr2	216407484	216488053
SMARCAL1_chr2_216407484_216488053	0/0	a0004	954	10	0	5	5	0	0	copy fasta	SMARCAL1	chr2	216407484	216488053
SMARCAL1_chr2_216407484_216488053	0/0	a0005	954	6	6	0	0	0	0	copy fasta	SMARCAL1	chr2	216407484	216488053
SMARCAL1_chr2_216407484_216488053	0/0	a0006	954	4	3	1	0	0	0	copy fasta	SMARCAL1	chr2	216407484	216488053
SMARCAL1_chr2_216407484_216488053	0/0	a0007	954	4	4	0	0	0	0	copy fasta	SMARCAL1	chr2	216407484	216488053
SMARCAL1_chr2_216407484_216488053	0/0	a0008	954	1	0	0	0	0	1	copy fasta	SMARCAL1	chr2	216407484	216488053
SMARCAL1_chr2_216407484_216488053	0/0	a0009	954	1	1	0	0	0	0	copy fasta	SMARCAL1	chr2	216407484	216488053
SMARCAL1_chr2_216407484_216488053	0/0	a0010	954	1	0	0	1	0	0	copy fasta	SMARCAL1	chr2	216407484	216488053
SMARCAL1_chr2_216407484_216488053	0/0	a0011	954	1	0	0	0	0	1	copy fasta	SMARCAL1	chr2	216407484	216488053
SMARCAL1_chr2_216407484_216488053	0/0	a0012	954	1	0	0	1	0	0	copy fasta	SMARCAL1	chr2	216407484	216488053
SMARCB1_chr22_23781966_23843009	0/1	a0001	385	362	92	64	149	16	40	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	a0002	385	1	0	0	1	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCC1_chr3_47580269_47786893	1/0	a0001	1105	214	60	40	79	4	30	copy fasta	SMARCC1	chr3	47580269	47786893
SMARCC1_chr3_47580269_47786893	0/0	a0002	1105	1	0	1	0	0	0	copy fasta	SMARCC1	chr3	47580269	47786893