JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SMC2_chr9_104089309_104146419	0/0	a0006	1197	1	0	0	1	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC3_chr10_110562695_110611048	1/1	a0001	1217	327	82	56	151	2	34	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	a0002	1217	1	0	0	1	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC4_chr3_160394650_160439953	1/1	a0001	1288	297	83	62	107	11	32	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	a0002	1288	10	2	0	3	1	4	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	a0003	1274	6	0	0	6	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	a0004	1288	5	0	0	5	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	a0005	1288	3	3	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	a0006	1288	2	2	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	a0007	1288	1	0	0	0	0	1	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	a0008	1288	1	0	0	1	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	a0009	553	1	0	0	1	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	a0010	1288	1	1	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	a0011	1288	1	1	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	a0012	1288	1	1	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	a0013	1288	1	1	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	a0014	1288	1	0	0	0	0	1	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	a0015	1288	1	0	0	1	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC5_chr9_70253978_70359873	0/0	a0001	1101	158	38	40	64	4	12	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	a0002	1101	90	6	11	56	1	16	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	1/1	a0003	1101	68	20	8	29	3	6	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	a0004	1101	31	15	10	2	2	2	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	a0005	1101	6	5	1	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	a0006	1101	2	2	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	a0007	1101	2	0	0	0	0	2	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	a0008	1101	1	0	0	1	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	a0009	1101	1	1	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	a0010	1101	1	0	0	1	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	a0011	1101	1	0	0	1	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	a0012	1101	1	0	0	1	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	a0013	1101	1	1	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	a0014	1101	1	0	0	1	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	a0015	1101	1	1	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	a0016	1101	1	1	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC6_chr2_17658812_17758810	1/0	a0001	1091	193	52	42	69	9	20	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	a0002	1091	32	24	4	0	2	2	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/1	a0003	1091	28	6	12	4	3	2	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	a0004	1091	1	0	0	1	0	0	copy fasta	SMC6	chr2	17658812	17758810
SMCHD1_chr18_2650726_2810017	0/0	a0001	2005	162	52	39	49	5	17	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	1/1	a0002	2005	95	23	8	48	4	10	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	a0003	2005	54	2	17	28	4	3	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	a0004	2005	10	9	1	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	a0005	2005	8	1	1	5	1	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	a0006	2005	2	0	0	2	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	a0007	2005	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	a0008	2005	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	a0009	2005	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	a0010	2005	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	a0011	2005	1	0	0	1	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	a0012	2005	1	0	0	1	0	0	copy fasta	SMCHD1	chr18	2650726	2810017