JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SMIM24_chr19_3468986_3485525	0/0	a0003	130	2	0	0	0	0	2	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/1	a0004	130	2	0	0	0	1	0	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/0	a0005	130	1	0	1	0	0	0	copy fasta	SMIM24	chr19	3468986	3485525
SMIM26_chr20_18562432_18574560	1/1	a0001	95	427	81	84	198	16	46	copy fasta	SMIM26	chr20	18562432	18574560
SMIM26_chr20_18562432_18574560	0/0	a0002	95	13	13	0	0	0	0	copy fasta	SMIM26	chr20	18562432	18574560
SMIM27_chr9_32547327_32558007	1/1	a0001	55	372	90	66	162	14	38	copy fasta	SMIM27	chr9	32547327	32558007
SMIM27_chr9_32547327_32558007	0/0	a0002	55	12	2	8	0	2	0	copy fasta	SMIM27	chr9	32547327	32558007
SMIM27_chr9_32547327_32558007	0/0	a0003	55	2	2	0	0	0	0	copy fasta	SMIM27	chr9	32547327	32558007
SMIM28_chr6_138372905_138388486	1/1	a0001	152	295	56	57	130	14	36	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	a0002	152	77	36	7	28	2	4	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	a0003	19	1	1	0	0	0	0	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	a0004	152	1	1	0	0	0	0	copy fasta	SMIM28	chr6	138372905	138388486
SMIM29_chr6_34241395_34254006	1/1	a0001	102	354	94	74	132	14	38	copy fasta	SMIM29	chr6	34241395	34254006
SMIM2_chr13_44138150_44166257	1/1	a0001	85	379	95	64	156	16	46	copy fasta	SMIM2	chr13	44138150	44166257
SMIM2_chr13_44138150_44166257	0/0	a0002	85	1	1	0	0	0	0	copy fasta	SMIM2	chr13	44138150	44166257
SMIM30_chr7_113111718_113123554	1/1	a0001	59	336	88	72	116	14	44	copy fasta	SMIM30	chr7	113111718	113123554
SMIM31_chr4_164749131_164808795	1/1	a0001	71	363	87	64	162	14	34	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	a0002	71	1	1	0	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM32_chr5_136186468_136198162	1/1	a0001	103	233	31	39	119	10	32	copy fasta	SMIM32	chr5	136186468	136198162
SMIM32_chr5_136186468_136198162	0/0	a0002	103	172	59	23	74	8	8	copy fasta	SMIM32	chr5	136186468	136198162
SMIM32_chr5_136186468_136198162	0/0	a0003	103	3	0	0	3	0	0	copy fasta	SMIM32	chr5	136186468	136198162
SMIM33_chr5_139466004_139478700	1/0	a0001	132	278	91	35	130	8	13	copy fasta	SMIM33	chr5	139466004	139478700
SMIM33_chr5_139466004_139478700	0/1	a0002	132	133	7	39	58	8	20	copy fasta	SMIM33	chr5	139466004	139478700
SMIM33_chr5_139466004_139478700	0/0	a0003	132	3	0	0	3	0	0	copy fasta	SMIM33	chr5	139466004	139478700
SMIM33_chr5_139466004_139478700	0/0	a0004	132	1	0	0	0	0	1	copy fasta	SMIM33	chr5	139466004	139478700
SMIM33_chr5_139466004_139478700	0/0	a0005	132	1	0	0	1	0	0	copy fasta	SMIM33	chr5	139466004	139478700
SMIM35_chr11_117998634_118091963	1/1	a0001	85	277	65	65	96	14	35	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	a0002	85	118	18	6	82	4	8	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	a0003	85	8	8	0	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	a0004	85	3	3	0	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	a0005	85	2	0	1	0	0	1	copy fasta	SMIM35	chr11	117998634	118091963
SMIM36_chr17_55444856_55516452	1/1	a0001	93	335	72	67	136	14	44	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/0	a0002	94	4	4	0	0	0	0	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/0	a0003	93	1	0	1	0	0	0	copy fasta	SMIM36	chr17	55444856	55516452
SMIM38_chr11_69150935_69167440	1/1	a0001	51	438	96	78	208	16	38	copy fasta	SMIM38	chr11	69150935	69167440
SMIM39_chr2_131030092_131040262	1/1	a0001	56	346	99	61	128	14	42	copy fasta	SMIM39	chr2	131030092	131040262
SMIM39_chr2_131030092_131040262	0/0	a0002	56	2	1	1	0	0	0	copy fasta	SMIM39	chr2	131030092	131040262
SMIM3_chr5_150773757_150801734	1/1	a0001	60	388	96	77	164	12	37	copy fasta	SMIM3	chr5	150773757	150801734
SMIM3_chr5_150773757_150801734	0/0	a0002	60	15	0	0	8	0	7	copy fasta	SMIM3	chr5	150773757	150801734
SMIM3_chr5_150773757_150801734	0/0	a0003	60	1	0	1	0	0	0	copy fasta	SMIM3	chr5	150773757	150801734
SMIM3_chr5_150773757_150801734	0/0	a0004	60	1	0	0	1	0	0	copy fasta	SMIM3	chr5	150773757	150801734
SMIM3_chr5_150773757_150801734	0/0	a0005	32	1	0	0	1	0	0	copy fasta	SMIM3	chr5	150773757	150801734
SMIM40_chr6_33318628_33334279	0/1	a0001	79	381	98	70	158	14	40	copy fasta	SMIM40	chr6	33318628	33334279
SMIM40_chr6_33318628_33334279	0/0	a0002	79	2	2	0	0	0	0	copy fasta	SMIM40	chr6	33318628	33334279
SMIM41_chr12_52074704_52113255	0/0	a0000	0	10	0	3	0	4	3	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	1/1	a0001	93	336	85	57	144	10	38	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	a0002	93	31	9	3	16	0	3	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	a0003	93	2	2	0	0	0	0	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	a0004	93	1	0	1	0	0	0	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	a0005	93	1	0	1	0	0	0	copy fasta	SMIM41	chr12	52074704	52113255