Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABLIM3_chr5_149136493_149265542	0/0	a0002	683	6	6	0	0	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	a0003	683	2	0	2	0	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	a0004	683	1	0	0	1	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	a0005	683	1	0	0	1	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	a0006	683	1	1	0	0	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABRACL_chr6_139023745_139048302	1/1	a0001	81	448	94	70	220	14	48	copy fasta	ABRACL	chr6	139023745	139048302
ABRAXAS1_chr4_83454517_83490100	1/0	a0001	409	195	80	28	56	9	21	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/1	a0002	409	153	13	25	95	3	16	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	a0003	409	5	0	3	0	2	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	a0004	409	1	0	0	0	0	1	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	a0005	409	1	0	0	1	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	a0006	409	1	1	0	0	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS2_chr10_124796819_124841667	1/1	a0001	415	350	82	56	152	14	44	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRA_chr8_106754483_106775244	1/1	a0001	381	425	94	77	197	14	41	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	a0002	381	9	0	3	0	3	3	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	a0003	381	2	2	0	0	0	0	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	a0004	381	2	0	0	2	0	0	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	a0005	381	1	0	0	0	1	0	copy fasta	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	a0006	381	1	0	0	1	0	0	copy fasta	ABRA	chr8	106754483	106775244
ABR_chr17_998519_1184981	0/1	a0001	859	332	90	70	121	12	38	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	a0002	859	2	0	2	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	a0003	859	1	0	0	1	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	a0004	859	1	0	0	1	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	a0005	859	1	0	0	1	0	0	copy fasta	ABR	chr17	998519	1184981
ABT1_chr6_26591953_26605739	1/1	a0001	272	402	90	74	176	14	46	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	a0002	272	4	2	2	0	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	a0003	191	1	0	0	1	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	a0004	272	1	0	0	1	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	a0005	272	1	0	0	1	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	a0006	272	1	0	0	1	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABTB1_chr3_127667952_127685926	1/1	a0001	478	431	96	80	194	17	42	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	a0002	478	5	0	0	5	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	a0003	478	2	0	0	0	0	2	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	a0004	478	1	0	0	1	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	a0005	478	1	0	0	0	1	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB2_chr11_34145987_34363010	1/1	a0001	1025	178	47	45	54	12	18	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	a0002	1025	53	21	3	29	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	a0003	1025	9	9	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	a0004	1025	4	4	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	a0005	1025	1	0	0	1	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	a0006	1025	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB3_chr12_107313434_107664642	0/0	a0001	1104	74	33	12	18	3	8	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	a0002	1104	45	6	9	18	4	8	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	a0003	1104	29	10	7	10	0	2	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	a0004	1104	12	10	2	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	a0005	1104	8	1	1	4	1	1	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	a0006	1104	3	3	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	a0007	1104	3	3	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	a0008	1104	2	0	0	0	0	2	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	a0009	1104	1	0	0	0	0	1	copy fasta	ABTB3	chr12	107313434	107664642