JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
B3GLCT_chr13_31194975_31337276	0/0	a0001	498	140	22	33	65	5	15	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	1/1	a0002	498	118	56	15	32	3	10	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	a0003	498	3	0	3	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	a0004	498	3	1	1	0	0	1	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	a0005	338	2	0	2	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	a0006	498	1	0	0	1	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	a0007	498	1	1	0	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GNT2_chr2_62191115_62229731	1/1	a0001	397	390	82	69	173	18	46	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	a0002	397	12	11	1	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	a0003	397	1	0	0	1	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	a0004	397	1	1	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	a0005	397	1	1	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	a0006	397	1	1	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT3_chr19_17790138_17818576	0/1	a0001	372	293	83	57	98	15	39	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	1/0	a0002	372	96	9	17	57	1	11	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	a0003	372	7	2	3	0	2	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	a0004	372	5	5	0	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	a0005	372	1	0	0	1	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	a0006	241	1	0	0	1	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	a0007	372	1	0	1	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	a0008	372	1	0	0	1	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	a0009	372	1	1	0	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT4_chr12_122198709_122213952	0/0	a0001	378	185	35	18	109	3	20	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	1/1	a0002	378	173	24	53	66	13	15	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	a0003	378	23	11	1	9	0	2	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	a0004	378	16	16	0	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	a0005	378	5	4	0	1	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	a0006	378	2	0	0	0	0	2	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	a0007	378	2	2	0	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	a0008	378	1	0	0	0	0	1	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	a0009	378	1	0	1	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	a0010	378	1	0	1	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	a0011	378	1	1	0	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	a0012	378	1	1	0	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	a0013	378	1	0	0	1	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT5_chr3_183248253_183278385	1/1	a0001	378	385	94	73	170	14	32	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	a0002	378	2	2	0	0	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	a0003	378	1	0	1	0	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	a0004	378	1	0	0	1	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	a0005	378	1	0	0	1	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT6_chr11_77029398_77046973	1/1	a0001	384	342	59	70	154	18	39	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	a0002	384	91	39	8	39	0	5	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	a0003	384	3	0	3	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	a0004	384	2	2	0	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	a0005	384	2	0	2	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	a0006	384	1	0	0	1	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	a0007	384	1	0	1	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT7_chr2_231390710_231406164	1/1	a0001	401	325	83	43	148	11	38	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	a0002	401	95	14	22	44	5	10	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	a0003	401	2	2	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164