JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SMIM41_chr12_52074704_52113255	0/0	a0006	93	1	0	1	0	0	0	copy fasta	SMIM41	chr12	52074704	52113255
SMIM42_chr1_158122287_158133301	1/1	a0001	70	404	98	70	172	16	46	copy fasta	SMIM42	chr1	158122287	158133301
SMIM42_chr1_158122287_158133301	0/0	a0002	70	1	0	0	1	0	0	copy fasta	SMIM42	chr1	158122287	158133301
SMIM42_chr1_158122287_158133301	0/0	a0003	70	1	0	0	1	0	0	copy fasta	SMIM42	chr1	158122287	158133301
SMIM43_chr4_121753930_121770164	1/1	a0001	63	438	96	80	204	14	42	copy fasta	SMIM43	chr4	121753930	121770164
SMIM44_chr19_3477110_3488441	1/1	a0001	149	395	97	77	163	12	44	copy fasta	SMIM44	chr19	3477110	3488441
SMIM44_chr19_3477110_3488441	0/0	a0002	149	2	0	0	2	0	0	copy fasta	SMIM44	chr19	3477110	3488441
SMIM44_chr19_3477110_3488441	0/0	a0003	149	2	0	1	1	0	0	copy fasta	SMIM44	chr19	3477110	3488441
SMIM44_chr19_3477110_3488441	0/0	a0004	149	1	1	0	0	0	0	copy fasta	SMIM44	chr19	3477110	3488441
SMIM45_chr22_41947150_41963939	1/1	a0001	68	382	92	76	154	16	42	copy fasta	SMIM45	chr22	41947150	41963939
SMIM46_chr19_14107324_14117476	0/0	a0000	0	1	1	0	0	0	0	copy fasta	SMIM46	chr19	14107324	14117476
SMIM46_chr19_14107324_14117476	1/1	a0001	50	366	89	74	145	16	40	copy fasta	SMIM46	chr19	14107324	14117476
SMIM46_chr19_14107324_14117476	0/0	a0002	50	1	0	0	1	0	0	copy fasta	SMIM46	chr19	14107324	14117476
SMIM47_chr19_50780728_50791160	1/1	a0001	28	351	90	78	125	12	44	copy fasta	SMIM47	chr19	50780728	50791160
SMIM47_chr19_50780728_50791160	0/0	a0002	28	1	0	0	1	0	0	copy fasta	SMIM47	chr19	50780728	50791160
SMIM5_chr17_75628434_75646404	1/1	a0001	77	408	94	74	174	14	50	copy fasta	SMIM5	chr17	75628434	75646404
SMIM5_chr17_75628434_75646404	0/0	a0002	77	2	2	0	0	0	0	copy fasta	SMIM5	chr17	75628434	75646404
SMIM5_chr17_75628434_75646404	0/0	a0003	77	2	2	0	0	0	0	copy fasta	SMIM5	chr17	75628434	75646404
SMIM6_chr17_75641251_75652974	1/1	a0001	62	410	96	70	180	14	48	copy fasta	SMIM6	chr17	75641251	75652974
SMIM6_chr17_75641251_75652974	0/0	a0002	62	6	0	0	6	0	0	copy fasta	SMIM6	chr17	75641251	75652974
SMIM7_chr19_16641148_16665144	1/1	a0001	75	359	94	72	139	14	38	copy fasta	SMIM7	chr19	16641148	16665144
SMIM7_chr19_16641148_16665144	0/0	a0002	75	1	0	0	1	0	0	copy fasta	SMIM7	chr19	16641148	16665144
SMIM8_chr6_87317588_87347329	1/1	a0001	97	404	77	68	195	16	46	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	a0002	97	12	12	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	a0003	97	2	2	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	a0004	97	1	0	0	1	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	a0005	97	1	1	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM9_chrX_154818348_154839662	1/1	a0001	99	269	45	56	125	11	30	copy fasta	SMIM9	chrX	154818348	154839662
SMIM9_chrX_154818348_154839662	0/0	a0002	99	31	29	2	0	0	0	copy fasta	SMIM9	chrX	154818348	154839662
SMKR1_chr7_129497531_129517918	0/0	a0000	0	1	0	0	0	0	1	copy fasta	SMKR1	chr7	129497531	129517918
SMKR1_chr7_129497531_129517918	1/1	a0001	65	410	85	82	175	17	49	copy fasta	SMKR1	chr7	129497531	129517918
SMKR1_chr7_129497531_129517918	0/0	a0002	18	5	5	0	0	0	0	copy fasta	SMKR1	chr7	129497531	129517918
SMKR1_chr7_129497531_129517918	0/0	a0003	65	3	3	0	0	0	0	copy fasta	SMKR1	chr7	129497531	129517918
SMKR1_chr7_129497531_129517918	0/0	a0004	65	1	0	0	0	1	0	copy fasta	SMKR1	chr7	129497531	129517918
SMKR1_chr7_129497531_129517918	0/0	a0005	48	1	1	0	0	0	0	copy fasta	SMKR1	chr7	129497531	129517918
SMKR1_chr7_129497531_129517918	0/0	a0006	65	1	0	0	1	0	0	copy fasta	SMKR1	chr7	129497531	129517918
SMLR1_chr6_130822406_130842135	0/0	a0001	107	234	45	26	134	4	25	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	1/1	a0002	107	198	45	56	64	12	19	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	a0003	107	4	0	0	0	0	4	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	a0004	107	3	3	0	0	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	a0005	107	1	1	0	0	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMN1_chr5_70920087_70958015	0/0	a0001	294	35	29	4	2	0	0	copy fasta	SMN1	chr5	70920087	70958015
SMN1_chr5_70920087_70958015	0/0	a0002	294	1	1	0	0	0	0	copy fasta	SMN1	chr5	70920087	70958015
SMN2_chr5_70044669_70082595	0/0	a0000	0	3	0	3	0	0	0	copy fasta	SMN2	chr5	70044669	70082595
SMN2_chr5_70044669_70082595	0/0	a0001	294	103	15	17	43	4	24	copy fasta	SMN2	chr5	70044669	70082595
SMN2_chr5_70044669_70082595	0/0	a0002	294	1	0	0	1	0	0	copy fasta	SMN2	chr5	70044669	70082595
SMN2_chr5_70044669_70082595	0/0	a0003	294	1	1	0	0	0	0	copy fasta	SMN2	chr5	70044669	70082595
SMNDC1_chr10_110285730_110309920	1/1	a0001	238	390	88	66	179	14	41	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	a0002	238	1	0	0	0	0	1	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	a0003	238	1	0	0	1	0	0	copy fasta	SMNDC1	chr10	110285730	110309920