JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SMOC1_chr14_69874416_70037366	1/1	a0001	435	265	89	57	75	14	28	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	a0002	435	1	1	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	a0003	435	1	1	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	a0004	435	1	0	1	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	a0005	435	1	0	0	1	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	a0006	435	1	1	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC2_chr6_168436184_168672992	1/1	a0001	446	176	48	30	65	8	23	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	a0002	446	1	1	0	0	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	a0003	446	1	0	0	1	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	a0004	446	1	0	0	0	0	1	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	a0005	446	1	1	0	0	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOX_chr20_4143828_4192727	1/1	a0001	555	424	94	72	189	18	49	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	a0002	555	1	0	0	1	0	0	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	a0003	555	1	0	0	0	0	1	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	a0004	555	1	1	0	0	0	0	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	a0005	555	1	1	0	0	0	0	copy fasta	SMOX	chr20	4143828	4192727
SMO_chr7_129183633_129218545	1/1	a0001	787	370	75	68	173	11	41	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	a0002	787	33	21	7	0	1	4	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	a0003	787	1	0	1	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	a0004	787	1	0	0	0	0	1	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	a0005	787	1	0	0	0	1	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	a0006	787	1	0	0	1	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	a0007	787	1	0	0	0	1	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	a0008	787	1	1	0	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	a0009	787	1	1	0	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMPD1_chr11_6385474_6399996	0/1	a0001	631	200	21	42	102	8	26	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	a0002	629	65	14	18	26	0	7	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	a0003	629	36	13	14	0	5	4	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	1/0	a0004	631	24	23	0	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	a0005	627	21	1	0	13	2	5	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	a0006	631	6	0	3	2	1	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	a0007	633	5	0	2	0	0	3	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	a0008	631	5	5	0	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	a0009	629	5	4	1	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	a0010	629	5	5	0	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	a0011	625	5	4	1	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	a0012	635	2	1	0	1	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	a0013	631	2	0	2	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	a0014	631	2	0	0	0	0	2	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	a0015	629	1	1	0	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	a0016	623	1	0	0	0	0	1	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	a0017	629	1	1	0	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	a0018	629	1	0	1	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	a0019	629	1	1	0	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD2_chr6_109435724_109448919	0/0	a0001	423	176	57	27	67	8	17	copy fasta	SMPD2	chr6	109435724	109448919
SMPD2_chr6_109435724_109448919	1/1	a0002	423	172	20	41	84	7	18	copy fasta	SMPD2	chr6	109435724	109448919
SMPD2_chr6_109435724_109448919	0/0	a0003	423	71	3	9	47	1	11	copy fasta	SMPD2	chr6	109435724	109448919
SMPD2_chr6_109435724_109448919	0/0	a0004	422	13	12	1	0	0	0	copy fasta	SMPD2	chr6	109435724	109448919
SMPD2_chr6_109435724_109448919	0/0	a0005	423	4	0	0	4	0	0	copy fasta	SMPD2	chr6	109435724	109448919
SMPD2_chr6_109435724_109448919	0/0	a0006	413	1	0	0	1	0	0	copy fasta	SMPD2	chr6	109435724	109448919