JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SMPD2_chr6_109435724_109448919	0/0	a0007	423	1	0	0	1	0	0	copy fasta	SMPD2	chr6	109435724	109448919
SMPD3_chr16_68353327_68453508	1/1	a0001	655	197	78	39	47	8	23	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	a0002	655	4	1	3	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	a0003	655	1	1	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	a0004	655	1	0	0	1	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	a0005	655	1	0	0	1	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	a0006	655	1	0	0	0	0	1	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	a0007	655	1	0	0	1	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	a0008	655	1	1	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	a0009	655	1	1	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD4_chr2_130146408_130186602	1/1	a0001	827	310	82	60	119	12	35	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	a0002	827	11	9	2	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	a0003	827	2	0	0	2	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	a0004	827	2	0	0	2	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	a0005	827	2	2	0	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	a0006	827	1	0	0	1	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	a0007	827	1	1	0	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	a0008	827	1	1	0	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	a0009	827	1	0	0	0	0	1	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	a0010	827	1	1	0	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPDL3A_chr6_122784258_122814720	1/1	a0001	453	371	75	64	193	12	25	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	a0002	453	34	5	5	4	3	17	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	a0003	453	18	0	13	3	0	2	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	a0004	453	9	8	1	0	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	a0005	194	2	0	2	0	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	a0006	453	2	0	1	0	1	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	a0007	453	1	1	0	0	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	a0008	453	1	1	0	0	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	a0009	453	1	0	0	0	0	1	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	a0010	453	1	0	0	1	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	a0011	453	1	0	0	0	0	1	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	a0012	453	1	0	0	1	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3B_chr1_27930000_27964152	1/1	a0001	455	323	82	49	148	8	34	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	a0002	455	85	6	20	41	10	8	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	a0003	455	11	0	8	2	0	1	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	a0004	455	4	4	0	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	a0005	455	2	0	2	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	a0006	455	2	2	0	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	a0007	455	1	0	0	1	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	a0008	455	1	1	0	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	a0009	455	1	0	1	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	a0010	455	1	0	0	0	0	1	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	a0011	455	1	1	0	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPX_chrX_21700978_21763116	1/1	a0001	88	289	76	50	120	11	30	copy fasta	SMPX	chrX	21700978	21763116
SMR3A_chr4_70355760_70372158	0/0	a0000	0	1	0	0	1	0	0	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/1	a0001	134	303	76	54	139	8	25	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/0	a0002	134	132	11	16	83	6	16	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	1/0	a0003	134	18	13	3	0	0	1	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/0	a0004	134	1	0	0	1	0	0	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/0	a0005	134	1	0	1	0	0	0	copy fasta	SMR3A	chr4	70355760	70372158