JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SMR3A_chr4_70355760_70372158	0/0	a0006	134	1	0	0	1	0	0	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/0	a0007	134	1	0	0	1	0	0	copy fasta	SMR3A	chr4	70355760	70372158
SMR3B_chr4_70378131_70395244	1/1	a0001	79	462	100	78	218	16	48	copy fasta	SMR3B	chr4	70378131	70395244
SMS_chrX_21935709_21999837	1/1	a0001	366	295	74	48	128	13	30	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	a0002	366	1	0	0	1	0	0	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	a0003	366	1	0	0	1	0	0	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	a0004	366	1	0	0	1	0	0	copy fasta	SMS	chrX	21935709	21999837
SMTNL1_chr11_57532595_57555272	1/0	a0001	494	183	48	41	70	8	15	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/1	a0002	494	162	28	35	77	5	16	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	a0003	494	10	9	1	0	0	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	a0004	494	2	2	0	0	0	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	a0005	494	2	0	1	0	1	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	a0006	494	2	2	0	0	0	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	a0007	494	1	0	0	1	0	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	a0008	494	1	0	0	1	0	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	a0009	494	1	0	0	0	0	1	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	a0010	388	1	1	0	0	0	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	a0011	494	1	0	0	1	0	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL2_chr17_4579529_4613319	1/1	a0001	461	255	83	40	88	9	33	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	a0002	461	167	7	41	102	7	10	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	a0003	461	9	8	1	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	a0004	461	2	0	2	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	a0005	461	2	0	0	2	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	a0006	461	1	1	0	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	a0007	461	1	0	0	0	0	1	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	a0008	461	1	0	1	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	a0009	461	1	1	0	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	a0010	461	1	0	0	1	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	a0011	461	1	0	0	1	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	a0012	461	1	0	1	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTN_chr22_31076318_31109624	1/0	a0001	915	181	24	32	111	4	9	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	a0002	915	78	18	24	5	6	25	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/1	a0003	915	48	15	8	17	3	4	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	a0004	915	17	17	0	0	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	a0005	915	14	0	4	9	0	1	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	a0006	915	6	6	0	0	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	a0007	915	5	5	0	0	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	a0008	915	3	0	0	0	0	3	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	a0009	915	2	0	0	0	0	2	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	a0010	915	1	0	1	0	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	a0011	915	1	0	0	0	0	1	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	a0012	915	1	0	0	0	0	1	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	a0013	915	1	0	0	1	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	a0014	915	1	1	0	0	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	a0015	915	1	0	1	0	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	a0016	915	1	0	0	0	1	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	a0017	926	1	0	0	1	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMU1_chr9_33036765_33081674	1/1	a0001	513	417	90	76	205	8	36	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	a0002	513	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMUG1_chr12_54175366_54193985	1/1	a0001	270	418	76	79	199	18	44	copy fasta	SMUG1	chr12	54175366	54193985