JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SMUG1_chr12_54175366_54193985	0/0	a0002	2	9	9	0	0	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	a0003	270	7	6	1	0	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	a0004	96	1	0	0	0	0	1	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	a0005	270	1	1	0	0	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	a0006	270	1	0	0	0	0	1	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	a0007	270	1	0	0	1	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMURF1_chr7_99022440_99149108	1/1	a0001	731	262	82	50	91	16	21	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	a0002	731	1	0	0	1	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	a0003	731	1	0	0	0	0	1	copy fasta	SMURF1	chr7	99022440	99149108
SMURF2_chr17_64537282_64667307	1/1	a0001	748	170	80	40	28	4	16	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	a0002	748	2	1	0	0	0	1	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	a0003	748	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	a0004	748	1	0	0	0	0	1	copy fasta	SMURF2	chr17	64537282	64667307
SMYD1_chr2_88062825_88118384	1/1	a0001	490	295	66	60	125	14	28	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	a0002	490	35	22	4	0	2	7	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	a0003	490	1	1	0	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	a0004	490	1	1	0	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	a0005	490	1	1	0	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	a0006	490	1	0	0	0	0	1	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	a0007	490	1	0	0	1	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	a0008	490	1	0	0	1	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	a0009	490	1	0	0	1	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	a0010	490	1	1	0	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD2_chr1_214276159_214342131	0/1	a0001	433	285	91	49	104	13	27	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	0/0	a0002	433	55	0	14	39	0	2	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	1/0	a0003	433	30	1	3	17	0	8	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	0/0	a0004	433	4	4	0	0	0	0	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	0/0	a0005	433	3	0	2	0	0	1	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	0/0	a0006	433	1	0	0	0	1	0	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	0/0	a0007	433	1	0	0	0	0	1	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	0/0	a0008	433	1	0	0	0	0	1	copy fasta	SMYD2	chr1	214276159	214342131
SMYD3_chr1_245744347_246512279	0/0	a0001	428	91	18	26	35	2	10	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	a0002	428	56	39	8	8	0	1	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	a0003	428	1	1	0	0	0	0	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	a0004	428	1	0	0	0	0	1	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	a0005	428	1	0	0	1	0	0	copy fasta	SMYD3	chr1	245744347	246512279
SMYD4_chr17_1774485_1834902	0/0	a0001	804	85	4	19	51	3	8	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0002	804	65	15	16	24	5	5	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0003	804	35	2	7	20	2	4	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0004	804	31	23	2	5	0	1	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	1/0	a0005	804	28	4	6	14	0	3	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0006	804	22	10	0	11	0	1	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0007	804	18	3	6	9	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0008	804	15	0	4	4	2	5	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0009	804	11	1	0	8	0	2	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0010	804	9	2	0	7	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0011	804	9	6	0	3	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0012	804	9	2	1	6	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0013	804	9	4	1	4	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/1	a0014	804	8	0	0	6	0	1	copy fasta	SMYD4	chr17	1774485	1834902