JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SNAP47_chr1_227730435_227786226	0/0	a0005	419	9	9	0	0	0	0	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	a0006	419	8	0	5	0	1	2	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	a0007	419	1	1	0	0	0	0	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	a0008	419	1	0	0	0	0	1	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	a0009	419	1	0	0	1	0	0	copy fasta	SNAP47	chr1	227730435	227786226
SNAP91_chr6_83547885_83714101	1/1	a0001	907	355	82	60	162	14	35	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	a0002	907	3	3	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	a0003	907	2	0	2	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	a0004	907	2	2	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	a0005	907	1	1	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	a0006	907	1	1	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	a0007	907	1	0	0	0	0	1	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	a0008	907	1	1	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAPC1_chr14_61757420_61801428	1/1	a0001	368	334	78	73	144	8	29	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	a0002	368	21	10	0	8	0	3	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	a0003	368	1	0	1	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC2_chr19_7915338_7928250	1/0	a0001	334	234	61	45	89	9	29	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/1	a0002	334	187	27	39	94	9	17	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	a0003	334	3	3	0	0	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	a0004	334	1	0	0	1	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	a0005	334	1	0	0	1	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	a0006	334	1	1	0	0	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	a0007	334	1	1	0	0	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	a0008	334	1	1	0	0	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	a0009	334	1	0	0	1	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC3_chr9_15417876_15466626	0/0	a0000	0	1	1	0	0	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	1/1	a0001	411	290	70	47	131	4	36	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	a0002	411	8	4	3	0	0	1	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	a0003	411	6	6	0	0	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	a0004	411	1	1	0	0	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	a0005	411	1	0	0	0	0	1	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	a0006	411	1	0	0	1	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC4_chr9_136370571_136405170	1/0	a0001	1469	187	47	35	70	8	26	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0002	1468	54	13	21	12	1	7	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0003	1469	49	2	15	22	4	6	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0004	1469	35	10	0	22	1	2	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0005	1469	8	0	2	0	3	3	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0006	1471	6	4	2	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0007	1469	4	0	3	0	0	1	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0008	1469	3	3	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0009	1468	2	0	0	2	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0010	1469	2	0	0	2	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0011	1469	2	0	1	0	1	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0012	1469	2	0	0	2	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0013	1469	2	0	0	2	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0014	1469	2	2	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0015	1469	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0016	1468	1	1	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0017	1468	1	0	1	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0018	1468	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170