JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SNED1_chr2_240993618_241100568	0/0	a0007	188	8	1	2	3	0	2	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0008	1413	7	7	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0009	1413	5	5	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0010	1413	4	3	1	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0011	1413	3	1	2	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0012	1413	2	2	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0013	1413	2	0	0	2	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0014	1413	1	0	0	1	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0015	1413	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0016	1413	1	0	0	1	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0017	1413	1	0	0	0	1	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0018	1413	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0019	1413	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0020	1413	1	0	0	1	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0021	1413	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0022	1413	1	0	0	1	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0023	1266	1	0	0	1	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNF8_chr17_48924316_48949842	1/1	a0001	258	391	88	74	176	14	37	copy fasta	SNF8	chr17	48924316	48949842
SNF8_chr17_48924316_48949842	0/0	a0002	258	1	0	0	0	0	1	copy fasta	SNF8	chr17	48924316	48949842
SNIP1_chr1_37529449_37559293	1/1	a0001	396	390	86	78	168	14	42	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	a0002	396	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	a0003	396	1	0	0	1	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	a0004	396	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	a0005	396	1	0	0	1	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNN_chr16_11663455_11684152	1/1	a0001	88	440	90	80	208	16	44	copy fasta	SNN	chr16	11663455	11684152
SNORC_chr2_232865264_232883700	1/1	a0001	121	449	98	80	203	18	48	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	a0002	121	3	0	0	3	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNPH_chr20_1261294_1314327	1/1	a0001	538	338	86	62	136	16	36	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	a0002	538	4	0	4	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	a0003	538	1	0	0	1	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	a0004	538	1	0	0	1	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	a0005	538	1	1	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	a0006	538	1	1	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	a0007	538	1	0	0	1	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	a0008	538	1	1	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	a0009	538	1	0	0	1	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	a0010	538	1	1	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNRK_chr3_43281540_43356143	1/1	a0001	765	256	82	58	81	7	26	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	a0002	765	1	0	0	1	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	a0003	765	1	0	0	0	1	0	copy fasta	SNRK	chr3	43281540	43356143
SNRNP200_chr2_96269338_96310546	1/1	a0001	2136	343	75	65	161	11	29	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	a0002	2136	2	0	2	0	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	a0003	2136	1	0	0	0	0	1	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	a0004	2136	1	0	0	0	0	1	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	a0005	2136	1	0	0	0	1	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	a0006	2136	1	0	0	0	0	1	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	a0007	2136	1	0	0	1	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	a0008	2136	1	0	1	0	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	a0009	2136	1	1	0	0	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP25_chr16_48828_62669	1/1	a0001	123	421	95	77	182	18	47	copy fasta	SNRNP25	chr16	48828	62669