JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SNRNP25_chr16_48828_62669	0/0	a0002	123	2	1	1	0	0	0	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	0/0	a0003	123	1	0	0	0	0	1	copy fasta	SNRNP25	chr16	48828	62669
SNRNP27_chr2_69888956_69910236	1/1	a0001	155	439	94	80	207	12	44	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	a0002	21	1	0	0	1	0	0	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP35_chr12_123453139_123471936	1/1	a0001	246	184	54	42	42	18	26	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP35_chr12_123453139_123471936	0/0	a0002	246	1	0	0	1	0	0	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP35_chr12_123453139_123471936	0/0	a0003	246	1	0	0	1	0	0	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP40_chr1_31254568_31301788	1/1	a0001	357	354	92	58	160	10	32	copy fasta	SNRNP40	chr1	31254568	31301788
SNRNP48_chr6_7585198_7616967	1/1	a0001	339	356	80	61	171	11	31	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	a0002	339	65	13	17	19	5	11	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	a0003	339	2	0	0	2	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	a0004	339	1	0	0	1	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	a0005	339	1	0	0	1	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	a0006	339	1	1	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP70_chr19_49080451_49113604	1/1	a0001	437	362	88	72	146	12	42	copy fasta	SNRNP70	chr19	49080451	49113604
SNRNP70_chr19_49080451_49113604	0/0	a0002	437	2	0	0	0	2	0	copy fasta	SNRNP70	chr19	49080451	49113604
SNRNP70_chr19_49080451_49113604	0/0	a0003	437	1	0	0	1	0	0	copy fasta	SNRNP70	chr19	49080451	49113604
SNRNP70_chr19_49080451_49113604	0/0	a0004	319	1	0	0	1	0	0	copy fasta	SNRNP70	chr19	49080451	49113604
SNRPA1_chr15_101276510_101300248	1/1	a0001	255	437	97	83	193	16	46	copy fasta	SNRPA1	chr15	101276510	101300248
SNRPA1_chr15_101276510_101300248	0/0	a0002	255	1	1	0	0	0	0	copy fasta	SNRPA1	chr15	101276510	101300248
SNRPA1_chr15_101276510_101300248	0/0	a0003	255	1	0	0	1	0	0	copy fasta	SNRPA1	chr15	101276510	101300248
SNRPA1_chr15_101276510_101300248	0/0	a0004	255	1	0	1	0	0	0	copy fasta	SNRPA1	chr15	101276510	101300248
SNRPA1_chr15_101276510_101300248	0/0	a0005	255	1	1	0	0	0	0	copy fasta	SNRPA1	chr15	101276510	101300248
SNRPA1_chr15_101276510_101300248	0/0	a0006	255	1	1	0	0	0	0	copy fasta	SNRPA1	chr15	101276510	101300248
SNRPA_chr19_40746203_40770389	1/1	a0001	282	410	92	68	188	16	44	copy fasta	SNRPA	chr19	40746203	40770389
SNRPA_chr19_40746203_40770389	0/0	a0002	282	2	0	0	0	0	2	copy fasta	SNRPA	chr19	40746203	40770389
SNRPB2_chr20_16725026_16747564	1/1	a0001	225	472	98	82	224	18	48	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB_chr20_2456642_2475789	1/1	a0001	231	374	92	62	164	10	44	copy fasta	SNRPB	chr20	2456642	2475789
SNRPC_chr6_34752505_34778857	1/1	a0001	159	368	80	60	172	10	44	copy fasta	SNRPC	chr6	34752505	34778857
SNRPD1_chr18_21607314_21638520	1/1	a0001	119	358	92	66	156	10	32	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD2_chr19_45682460_45696953	1/1	a0001	118	438	90	82	204	14	46	copy fasta	SNRPD2	chr19	45682460	45696953
SNRPD3_chr22_24550999_24579971	1/1	a0001	126	399	90	70	173	16	48	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	a0002	126	1	0	0	1	0	0	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPE_chr1_203856599_203876152	1/1	a0001	92	416	96	78	184	18	38	copy fasta	SNRPE	chr1	203856599	203876152
SNRPF_chr12_95853952_95871140	1/1	a0001	86	440	96	72	210	14	46	copy fasta	SNRPF	chr12	95853952	95871140
SNRPG_chr2_70276362_70298740	0/0	a0001	76	424	96	68	206	10	44	copy fasta	SNRPG	chr2	70276362	70298740
SNRPN_chr15_24949987_24983723	1/1	a0001	240	346	88	68	130	18	40	copy fasta	SNRPN	chr15	24949987	24983723
SNTA1_chr20_33402957_33448763	1/1	a0001	505	340	85	56	141	16	40	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	a0002	505	3	3	0	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	a0003	505	2	2	0	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	a0004	505	2	2	0	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	a0005	505	1	0	1	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	a0006	505	1	1	0	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	a0007	505	1	0	0	1	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	a0008	505	1	0	0	1	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	a0009	505	1	0	1	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	a0010	505	1	1	0	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	a0011	505	1	0	0	1	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTB1_chr8_120530756_120817046	1/1	a0001	538	238	64	45	95	4	28	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	a0002	538	7	7	0	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046