JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
B3GNT7_chr2_231390710_231406164	0/0	a0004	140	1	0	0	1	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	a0005	401	1	0	1	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	a0006	401	1	0	0	1	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	a0007	401	1	1	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT8_chr19_41420359_41432374	0/1	a0001	397	234	69	36	86	12	30	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	1/0	a0002	397	175	21	36	98	4	15	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	a0003	397	3	3	0	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	a0004	397	1	0	1	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	a0005	243	1	1	0	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	a0006	397	1	1	0	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	a0007	397	1	0	0	1	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	a0008	397	1	0	0	0	0	1	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	a0009	397	1	0	0	1	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	a0010	397	1	0	1	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	a0011	397	1	1	0	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT9_chr16_67143104_67155998	1/1	a0001	402	338	95	55	129	11	46	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	a0002	402	2	1	1	0	0	0	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	a0003	402	1	0	0	1	0	0	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	a0004	402	1	0	0	0	1	0	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNTL1_chr17_82937149_83056770	0/0	a0001	346	214	53	46	92	9	14	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	a0002	346	41	4	13	17	3	4	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	a0003	346	5	4	1	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	a0004	346	3	3	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	a0005	346	1	0	0	1	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	a0006	346	1	0	0	1	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	a0007	346	1	0	0	1	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B4GALNT1_chr12_57618409_57638201	1/1	a0001	533	295	50	52	149	9	33	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	a0002	533	98	38	22	28	4	6	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	a0003	533	9	7	1	0	0	1	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	a0004	533	2	0	1	0	1	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	a0005	533	1	0	0	1	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	a0006	533	1	1	0	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT2_chr17_49127769_49181840	1/1	a0001	506	324	64	64	149	9	36	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	a0002	506	37	16	8	5	2	6	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	a0003	433	5	5	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	a0004	506	2	0	0	2	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	a0005	506	2	2	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	a0006	506	2	2	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	a0007	506	2	0	0	0	1	1	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	a0008	506	1	0	0	0	0	1	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	a0009	506	1	0	0	1	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	a0010	506	1	0	0	1	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	a0011	506	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	a0012	506	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	a0013	506	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT3_chr12_454939_568509	1/0	a0001	998	222	32	48	113	5	23	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0002	998	39	5	8	19	3	4	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0003	998	27	14	4	0	2	7	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0004	998	21	6	2	12	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0005	998	18	8	1	8	0	1	copy fasta	B4GALNT3	chr12	454939	568509