JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SNTB1_chr8_120530756_120817046	0/0	a0003	540	3	3	0	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	a0004	538	2	0	0	2	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	a0005	538	1	0	1	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	a0006	538	1	0	0	1	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	a0007	538	1	1	0	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	a0008	538	1	1	0	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB2_chr16_69182164_69314052	1/1	a0001	540	216	83	38	57	8	28	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	a0002	232	1	0	0	1	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	a0003	540	1	1	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTG1_chr8_49906407_50801692	0/0	a0001	517	103	55	14	16	2	16	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	a0002	517	2	2	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	a0003	517	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG2_chr2_945849_1372613	0/0	a0001	539	53	9	18	10	6	10	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	1/0	a0002	539	39	2	9	10	5	12	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0003	539	20	11	5	1	1	2	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0004	539	19	11	1	3	0	4	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0005	539	13	8	3	0	2	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0006	539	12	5	1	4	0	2	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0007	539	6	6	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0008	539	4	0	0	4	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0009	539	4	3	0	1	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0010	539	4	2	2	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0011	539	2	2	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0012	539	2	0	1	1	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0013	539	2	0	2	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0014	539	1	1	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0015	539	1	1	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/1	a0016	539	1	0	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0017	539	1	1	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0018	342	1	1	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0019	539	1	1	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0020	539	1	0	0	1	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0021	539	1	0	0	1	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0022	539	1	0	0	1	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	a0023	539	1	0	0	1	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTN_chr3_63647675_63670212	1/1	a0001	147	448	94	72	220	16	44	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	a0002	147	1	1	0	0	0	0	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	a0003	147	1	1	0	0	0	0	copy fasta	SNTN	chr3	63647675	63670212
SNU13_chr22_41668933_41693867	1/1	a0001	128	376	88	72	154	16	44	copy fasta	SNU13	chr22	41668933	41693867
SNUPN_chr15_75593086_75630725	1/1	a0001	360	311	75	63	129	12	30	copy fasta	SNUPN	chr15	75593086	75630725
SNUPN_chr15_75593086_75630725	0/0	a0002	360	22	0	1	19	0	2	copy fasta	SNUPN	chr15	75593086	75630725
SNUPN_chr15_75593086_75630725	0/0	a0003	360	5	0	1	4	0	0	copy fasta	SNUPN	chr15	75593086	75630725
SNUPN_chr15_75593086_75630725	0/0	a0004	360	3	2	1	0	0	0	copy fasta	SNUPN	chr15	75593086	75630725
SNUPN_chr15_75593086_75630725	0/0	a0005	360	1	1	0	0	0	0	copy fasta	SNUPN	chr15	75593086	75630725
SNUPN_chr15_75593086_75630725	0/0	a0006	360	1	1	0	0	0	0	copy fasta	SNUPN	chr15	75593086	75630725
SNUPN_chr15_75593086_75630725	0/0	a0007	360	1	1	0	0	0	0	copy fasta	SNUPN	chr15	75593086	75630725
SNURF_chr15_24949987_24973821	0/0	a0000	0	1	0	0	1	0	0	copy fasta	SNURF	chr15	24949987	24973821
SNURF_chr15_24949987_24973821	1/1	a0001	71	385	90	72	159	18	44	copy fasta	SNURF	chr15	24949987	24973821
SNW1_chr14_77712599_77766156	1/1	a0001	536	365	94	62	153	18	36	copy fasta	SNW1	chr14	77712599	77766156
SNW1_chr14_77712599_77766156	0/0	a0002	528	1	0	0	1	0	0	copy fasta	SNW1	chr14	77712599	77766156