JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SNX10_chr7_26286862_26379383	1/1	a0001	201	389	92	66	169	16	44	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	a0002	201	1	0	0	1	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX11_chr17_48102766_48128601	1/1	a0001	270	416	92	70	194	18	40	copy fasta	SNX11	chr17	48102766	48128601
SNX12_chrX_71054247_71073334	1/1	a0001	162	308	74	62	131	9	30	copy fasta	SNX12	chrX	71054247	71073334
SNX12_chrX_71054247_71073334	0/0	a0002	162	1	0	0	1	0	0	copy fasta	SNX12	chrX	71054247	71073334
SNX13_chr7_17785761_17945494	1/1	a0001	957	336	73	68	144	14	35	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	a0002	957	1	1	0	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	a0003	957	1	0	0	0	0	1	copy fasta	SNX13	chr7	17785761	17945494
SNX14_chr6_85500496_85598858	1/0	a0001	946	354	89	56	164	10	34	copy fasta	SNX14	chr6	85500496	85598858
SNX14_chr6_85500496_85598858	0/1	a0002	946	5	0	2	0	2	0	copy fasta	SNX14	chr6	85500496	85598858
SNX14_chr6_85500496_85598858	0/0	a0003	946	1	1	0	0	0	0	copy fasta	SNX14	chr6	85500496	85598858
SNX15_chr11_65022439_65045572	1/1	a0001	342	255	64	49	104	13	23	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	a0002	342	48	22	9	6	1	10	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	a0003	342	22	10	2	9	0	1	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	a0004	342	7	0	0	7	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	a0005	342	2	0	0	2	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	a0006	342	2	2	0	0	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	a0007	342	1	1	0	0	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	a0008	342	1	1	0	0	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX16_chr8_81794583_81847185	0/0	a0000	0	1	0	0	1	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	1/1	a0001	344	299	77	69	95	10	46	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	a0002	344	3	3	0	0	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	a0003	344	2	2	0	0	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	a0004	120	1	0	1	0	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX17_chr2_27365616_27382535	1/1	a0001	470	363	74	69	161	14	43	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	a0002	470	3	3	0	0	0	0	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	a0003	470	3	3	0	0	0	0	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	a0004	470	1	0	1	0	0	0	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	a0005	470	1	0	0	1	0	0	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	a0006	470	1	0	0	0	0	1	copy fasta	SNX17	chr2	27365616	27382535
SNX18_chr5_54512759_54551586	1/1	a0001	624	386	86	71	168	16	43	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	a0002	624	1	0	0	1	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	a0003	624	1	0	0	1	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	a0004	624	1	0	0	0	0	1	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	a0005	624	1	0	1	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX19_chr11_130861250_130921479	0/1	a0001	992	179	30	35	72	8	33	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0002	992	80	1	21	50	3	5	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0003	992	53	6	5	40	1	1	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0004	992	35	22	3	8	1	1	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0005	992	17	17	0	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0006	992	16	14	1	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0007	992	14	0	0	14	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0008	992	4	0	0	4	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0009	992	2	0	0	2	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0010	992	1	1	0	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0011	992	1	1	0	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0012	992	1	0	0	1	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0013	992	1	0	0	1	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0014	992	1	0	0	0	0	1	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0015	992	1	1	0	0	0	0	copy fasta	SNX19	chr11	130861250	130921479