JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SNX29_chr16_11971734_12579287	0/0	a0003	813	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	a0004	813	1	0	0	0	1	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	a0005	813	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	a0006	813	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	a0007	813	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	a0008	813	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	a0009	813	1	0	0	0	0	1	copy fasta	SNX29	chr16	11971734	12579287
SNX2_chr5_122770080_122839543	1/1	a0001	519	370	92	68	160	14	34	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	a0002	519	1	0	0	1	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	a0003	519	1	0	0	1	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX30_chr9_112745760_112879987	1/0	a0001	437	310	73	56	132	15	33	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/1	a0002	437	24	0	5	14	3	1	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	a0003	437	2	0	0	2	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	a0004	437	1	1	0	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	a0005	437	1	0	1	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX31_chr8_100567889_100654665	1/0	a0001	440	84	10	14	44	4	11	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	a0002	440	51	14	12	16	2	7	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	a0003	440	35	17	9	1	0	8	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/1	a0004	440	31	7	5	11	3	4	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	a0005	440	25	5	8	8	0	4	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	a0006	440	21	5	6	5	2	3	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	a0007	440	18	10	2	5	0	1	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	a0008	440	16	11	5	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	a0009	314	5	4	1	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	a0010	314	3	3	0	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	a0011	440	3	3	0	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	a0012	314	3	3	0	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	a0013	440	1	1	0	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	a0014	470	1	0	1	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	a0015	471	1	0	1	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	a0016	481	1	0	0	1	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	a0017	495	1	0	0	1	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	a0018	469	1	0	1	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	a0019	440	1	0	1	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	a0020	440	1	0	0	0	1	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	a0021	440	1	1	0	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX32_chr11_65828963_65858701	1/1	a0001	403	386	88	70	170	14	42	copy fasta	SNX32	chr11	65828963	65858701
SNX32_chr11_65828963_65858701	0/0	a0002	403	2	0	0	2	0	0	copy fasta	SNX32	chr11	65828963	65858701
SNX32_chr11_65828963_65858701	0/0	a0003	403	1	0	0	1	0	0	copy fasta	SNX32	chr11	65828963	65858701
SNX32_chr11_65828963_65858701	0/0	a0004	403	1	0	0	1	0	0	copy fasta	SNX32	chr11	65828963	65858701
SNX33_chr15_75642912_75667301	1/1	a0001	574	417	93	70	190	14	48	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	a0002	574	2	2	0	0	0	0	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	a0003	574	1	1	0	0	0	0	copy fasta	SNX33	chr15	75642912	75667301
SNX3_chr6_108206222_108266040	1/1	a0001	162	356	98	52	152	12	40	copy fasta	SNX3	chr6	108206222	108266040
SNX4_chr3_125441650_125525202	1/1	a0001	450	355	88	72	149	10	34	copy fasta	SNX4	chr3	125441650	125525202
SNX4_chr3_125441650_125525202	0/0	a0002	450	5	0	0	5	0	0	copy fasta	SNX4	chr3	125441650	125525202
SNX5_chr20_17936600_17973794	1/1	a0001	404	388	90	74	164	16	42	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	a0002	404	6	6	0	0	0	0	copy fasta	SNX5	chr20	17936600	17973794
SNX6_chr14_34556093_34635148	1/1	a0001	406	322	88	58	126	12	36	copy fasta	SNX6	chr14	34556093	34635148
SNX7_chr1_98656721_98765500	1/1	a0001	451	324	83	59	131	10	39	copy fasta	SNX7	chr1	98656721	98765500