JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SNX7_chr1_98656721_98765500	0/0	a0002	451	54	1	3	49	0	1	copy fasta	SNX7	chr1	98656721	98765500
SNX8_chr7_2246770_2319441	1/1	a0001	465	342	75	65	143	14	43	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	a0002	465	13	11	2	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	a0003	465	5	5	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	a0004	465	2	2	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	a0005	460	2	0	0	2	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	a0006	465	2	2	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	a0007	465	1	1	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	a0008	465	1	0	0	1	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	a0009	99	1	0	1	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	a0010	465	1	0	0	0	0	1	copy fasta	SNX8	chr7	2246770	2319441
SNX9_chr6_157818246_157950077	1/1	a0001	595	238	74	37	83	12	30	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	a0002	592	57	2	10	36	2	7	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	a0003	595	2	2	0	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	a0004	595	2	0	1	0	0	1	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	a0005	595	2	0	0	2	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	a0006	595	1	0	0	1	0	0	copy fasta	SNX9	chr6	157818246	157950077
SOAT1_chr1_179288797_179363680	1/1	a0001	550	294	79	69	104	13	27	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	a0002	550	77	2	8	54	2	11	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	a0003	550	4	3	1	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	a0004	550	2	2	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	a0005	550	2	0	2	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	a0006	550	1	0	0	0	1	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	a0007	550	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	a0008	550	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT2_chr12_53098486_53129535	1/1	a0001	522	247	57	42	107	4	35	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	a0002	522	83	29	9	43	1	1	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	a0003	522	65	4	12	42	1	6	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	a0004	522	6	0	1	4	0	1	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	a0005	522	5	5	0	0	0	0	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	a0006	522	1	1	0	0	0	0	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	a0007	522	1	0	0	1	0	0	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	a0008	522	1	0	0	0	0	1	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	a0009	23	1	0	0	1	0	0	copy fasta	SOAT2	chr12	53098486	53129535
SOBP_chr6_107485117_107666306	0/1	a0001	873	280	72	34	139	8	26	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	a0002	873	5	5	0	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	1/0	a0003	873	5	2	2	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	a0004	873	4	1	0	3	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	a0005	873	2	0	0	2	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOCS1_chr16_11249417_11261204	1/1	a0001	211	432	92	76	202	18	42	copy fasta	SOCS1	chr16	11249417	11261204
SOCS2_chr12_93567675_93581745	1/1	a0001	198	415	84	78	193	16	42	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	a0002	198	14	14	0	0	0	0	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	a0003	198	8	0	0	8	0	0	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	a0004	198	1	0	0	1	0	0	copy fasta	SOCS2	chr12	93567675	93581745
SOCS3_chr17_78351778_78365077	1/1	a0001	225	463	100	85	215	16	45	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	a0002	225	3	0	0	3	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	a0003	225	1	0	1	0	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	a0004	225	1	0	0	0	0	1	copy fasta	SOCS3	chr17	78351778	78365077
SOCS4_chr14_55022236_55054489	1/1	a0001	440	392	96	68	170	14	42	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	a0002	440	2	0	0	0	2	0	copy fasta	SOCS4	chr14	55022236	55054489