JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SOCS5_chr2_46694295_46768129	1/1	a0001	536	379	88	70	165	16	38	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	a0002	536	1	0	0	1	0	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS6_chr18_70284045_70335199	1/1	a0001	535	355	92	60	139	14	48	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	a0002	535	1	1	0	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	a0003	535	1	1	0	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	a0004	535	1	0	0	1	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS7_chr17_38346844_38410593	0/1	a0001	645	268	77	50	98	12	30	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	a0002	646	13	13	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	a0003	645	3	0	0	3	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	a0004	645	2	0	0	0	2	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	a0005	645	1	0	0	1	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	a0006	645	1	0	1	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	a0007	645	1	0	1	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOD1_chr21_31654693_31673931	1/1	a0001	154	425	92	78	189	16	48	copy fasta	SOD1	chr21	31654693	31673931
SOD1_chr21_31654693_31673931	0/0	a0002	154	1	0	0	1	0	0	copy fasta	SOD1	chr21	31654693	31673931
SOD2_chr6_159664069_159698241	1/0	a0001	222	244	62	33	118	8	22	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/1	a0002	222	120	34	41	24	4	16	copy fasta	SOD2	chr6	159664069	159698241
SOD3_chr4_24790573_24805842	1/0	a0001	240	301	86	38	144	6	26	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/1	a0002	240	145	11	44	61	10	18	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	a0003	240	14	0	3	7	2	2	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	a0004	240	2	0	0	2	0	0	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	a0005	240	1	1	0	0	0	0	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	a0006	240	1	1	0	0	0	0	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	a0007	240	1	1	0	0	0	0	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	a0008	240	1	0	1	0	0	0	copy fasta	SOD3	chr4	24790573	24805842
SOGA1_chr20_36772447_36868538	0/1	a0001	1661	244	71	54	73	16	29	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	a0002	1661	11	8	3	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	a0003	1661	10	0	8	0	0	2	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	a0004	1661	7	0	0	7	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	a0005	1662	3	0	0	0	0	3	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	a0006	1661	3	3	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	1/0	a0007	1661	1	0	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	a0008	1661	1	0	1	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	a0009	1661	1	0	0	1	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	a0010	1661	1	0	0	1	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA3_chr6_127467974_127524335	1/1	a0001	947	336	94	64	128	12	36	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	a0002	947	4	0	4	0	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	a0003	947	2	0	2	0	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	a0004	947	1	0	0	1	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	a0005	947	1	0	1	0	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	a0006	947	1	0	0	1	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	a0007	947	1	0	1	0	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOHLH1_chr9_135688407_135704481	0/1	a0001	387	284	53	60	119	12	39	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	a0002	387	73	6	8	54	1	4	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	1/0	a0003	387	29	15	4	3	0	6	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	a0004	387	21	16	4	0	1	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	a0005	387	2	2	0	0	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	a0006	387	2	0	2	0	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	a0007	387	2	2	0	0	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	a0008	387	1	0	0	0	0	1	copy fasta	SOHLH1	chr9	135688407	135704481