JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SOHLH1_chr9_135688407_135704481	0/0	a0009	387	1	0	0	1	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	a0010	387	1	0	0	1	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	a0011	387	1	1	0	0	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	a0012	387	1	1	0	0	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH2_chr13_36163217_36219556	1/1	a0001	425	264	73	45	96	13	35	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	a0002	425	151	14	25	98	4	10	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	a0003	425	1	0	0	0	1	0	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	a0004	425	1	0	0	1	0	0	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	a0005	425	1	0	0	1	0	0	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	a0006	425	1	1	0	0	0	0	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	a0007	425	1	0	0	0	0	1	copy fasta	SOHLH2	chr13	36163217	36219556
SON_chr21_33538038_33582481	0/0	a0001	2426	221	57	35	99	6	24	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0002	2426	53	9	4	37	0	3	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/1	a0003	2426	31	5	6	7	4	8	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0004	2426	13	11	2	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0005	2419	10	1	4	4	0	1	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0006	2426	7	0	7	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0007	2419	5	0	3	1	1	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0008	2433	4	1	0	2	1	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0009	2426	1	0	1	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0010	2426	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0011	2426	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0012	2426	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0013	2426	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0014	2426	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0015	2419	1	0	1	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0016	2426	1	1	0	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0017	2426	1	0	1	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0018	2426	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0019	2426	1	0	1	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	1/0	a0020	2426	1	0	0	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0021	2426	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0022	2415	1	0	1	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0023	2419	1	0	1	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0024	2426	1	1	0	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0025	2419	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0026	2426	1	1	0	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0027	2426	1	1	0	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	a0028	2426	1	0	1	0	0	0	copy fasta	SON	chr21	33538038	33582481
SORBS1_chr10_95306773_95566371	0/1	a0001	1292	232	42	36	111	9	33	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	a0002	1292	28	25	0	1	0	2	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	a0003	1292	22	4	1	14	0	3	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	a0004	1292	3	0	0	0	0	3	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	a0005	1292	2	2	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	a0006	1292	2	2	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	a0007	1292	2	0	0	0	0	2	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	a0008	1292	2	0	1	0	1	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	1/0	a0009	1292	1	0	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	a0010	1292	1	1	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	a0011	1292	1	0	1	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371