JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SORBS1_chr10_95306773_95566371	0/0	a0012	1292	1	1	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	a0013	1292	1	0	0	0	0	1	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	a0014	1292	1	1	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	a0015	1292	1	0	1	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS2_chr4_185580523_185817194	1/1	a0001	1300	293	77	73	95	14	32	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	a0002	1300	7	6	1	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	a0003	1300	2	2	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	a0004	1300	2	2	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	a0005	1300	2	0	0	0	0	2	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	a0006	1300	1	0	0	1	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	a0007	1300	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	a0008	1300	1	0	0	1	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	a0009	1300	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	a0010	1300	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	a0011	1300	1	0	0	1	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS3_chr8_22546927_22580788	0/0	a0001	671	324	54	51	174	11	34	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0002	671	44	7	13	7	6	11	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0003	671	33	27	5	0	0	1	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0004	671	4	0	0	4	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0005	671	3	3	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0006	671	3	0	0	3	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0007	671	2	0	2	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0008	671	1	0	0	1	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0009	671	1	0	1	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0010	671	1	1	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0011	671	1	1	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0012	671	1	0	0	1	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0013	671	1	1	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0014	671	1	1	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0015	671	1	0	1	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0016	671	1	0	0	1	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0017	671	1	0	1	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0018	671	1	1	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0019	671	1	0	0	1	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0020	671	1	0	0	1	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0021	671	1	0	0	0	1	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	a0022	671	1	0	0	1	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORCS1_chr10_106568663_107169706	0/0	a0001	1168	110	49	17	38	0	6	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	a0002	1168	4	4	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	a0003	1168	3	3	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	a0004	1168	3	3	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	a0005	1168	2	2	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	a0006	1168	1	0	1	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	a0007	1168	1	0	1	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	a0008	924	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	a0009	1168	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	a0010	1168	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	a0011	1168	1	0	1	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	a0012	1168	1	0	0	1	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	a0013	1168	1	0	0	1	0	0	copy fasta	SORCS1	chr10	106568663	107169706