JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SORCS2_chr4_7187538_7747827	0/0	a0001	1159	121	48	34	15	6	18	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	a0002	1159	15	0	6	5	0	4	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	a0003	1159	7	6	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	a0004	1159	5	3	2	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	a0005	1159	4	4	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	a0006	1160	4	3	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	a0007	1159	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	a0008	1159	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	a0009	1159	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	a0010	1159	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	a0011	1159	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	a0012	1159	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	a0013	1159	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	a0014	1159	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	a0015	1159	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	a0016	1160	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	a0017	1159	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	a0018	1159	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS3_chr10_104636290_105270242	0/0	a0001	1222	115	39	31	24	6	15	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	a0002	1222	4	3	0	0	0	1	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	a0003	1222	2	2	0	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	a0004	1222	2	0	2	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	a0005	1222	2	2	0	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	a0006	1222	2	2	0	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	a0007	1222	1	0	1	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	a0008	1222	1	0	1	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	a0009	1222	1	0	0	1	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	a0010	1222	1	0	0	1	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	a0011	1222	1	1	0	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	a0012	1222	1	0	1	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	a0013	1222	1	1	0	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORD_chr15_45018195_45082185	0/1	a0001	357	196	18	44	94	9	30	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	a0002	357	79	52	12	14	1	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	1/0	a0003	357	23	14	6	2	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	a0004	357	8	7	0	1	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	a0005	357	1	1	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	a0006	357	1	0	0	1	0	0	copy fasta	SORD	chr15	45018195	45082185
SORL1_chr11_121447314_121638763	0/1	a0001	2214	215	52	40	92	7	23	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	a0002	2214	31	8	9	12	0	2	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	a0003	2214	6	6	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	a0004	2214	3	3	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	a0005	2214	3	0	3	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	a0006	2214	2	2	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	1/0	a0007	2214	2	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	a0008	2214	2	0	0	0	0	2	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	a0009	2214	1	0	0	1	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	a0010	2214	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	a0011	2214	1	0	0	0	0	1	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	a0012	2214	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	a0013	2214	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763