JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SORL1_chr11_121447314_121638763	0/0	a0014	2214	1	0	0	0	1	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	a0015	2214	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	a0016	2214	1	0	0	1	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORT1_chr1_109304575_109402918	1/1	a0001	831	229	81	53	47	11	35	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	a0002	831	4	3	1	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	a0003	831	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	a0004	831	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	a0005	831	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	a0006	831	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	a0007	831	1	0	0	0	0	1	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	a0008	831	1	0	0	0	1	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	a0009	831	1	0	0	1	0	0	copy fasta	SORT1	chr1	109304575	109402918
SOS1_chr2_38976549_39126051	1/1	a0001	1333	240	73	32	101	4	28	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	a0002	1333	3	0	3	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	a0003	1333	1	1	0	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	a0004	1333	1	0	0	1	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	a0005	1333	1	0	1	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS2_chr14_50112130_50236578	1/1	a0001	1332	361	70	74	159	14	42	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	a0002	1332	15	15	0	0	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	a0003	1332	2	2	0	0	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	a0004	1332	1	1	0	0	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	a0005	1332	1	0	0	1	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	a0006	1332	1	0	0	0	0	1	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	a0007	1332	1	0	0	0	0	1	copy fasta	SOS2	chr14	50112130	50236578
SOSTDC1_chr7_16456481_16470738	1/1	a0001	206	417	94	68	191	14	48	copy fasta	SOSTDC1	chr7	16456481	16470738
SOSTDC1_chr7_16456481_16470738	0/0	a0002	206	4	0	0	4	0	0	copy fasta	SOSTDC1	chr7	16456481	16470738
SOSTDC1_chr7_16456481_16470738	0/0	a0003	206	1	0	0	1	0	0	copy fasta	SOSTDC1	chr7	16456481	16470738
SOST_chr17_43748738_43763791	1/1	a0001	213	419	93	80	182	14	48	copy fasta	SOST	chr17	43748738	43763791
SOST_chr17_43748738_43763791	0/0	a0002	213	2	0	2	0	0	0	copy fasta	SOST	chr17	43748738	43763791
SOST_chr17_43748738_43763791	0/0	a0003	213	1	1	0	0	0	0	copy fasta	SOST	chr17	43748738	43763791
SOWAHA_chr5_132808302_132821786	0/1	a0001	549	312	73	52	150	6	30	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	a0002	552	61	9	11	29	5	7	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	a0003	549	14	10	4	0	0	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	1/0	a0004	549	5	0	3	0	1	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	a0005	549	4	3	1	0	0	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	a0006	542	1	0	0	1	0	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	a0007	552	1	0	0	0	0	1	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	a0008	549	1	0	0	1	0	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	a0009	549	1	0	0	1	0	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	a0010	549	1	1	0	0	0	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	a0011	549	1	0	0	0	0	1	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	a0012	549	1	0	1	0	0	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	a0013	549	1	0	0	0	0	1	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHB_chr4_76889152_76903144	1/1	a0001	793	309	47	60	160	11	29	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	a0002	793	43	4	1	34	3	1	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	a0003	793	34	13	4	13	1	3	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	a0004	793	31	18	5	0	0	8	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	a0005	793	4	4	0	0	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	a0006	793	4	4	0	0	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	a0007	795	4	4	0	0	0	0	copy fasta	SOWAHB	chr4	76889152	76903144