JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
B4GALNT3_chr12_454939_568509	0/0	a0006	998	15	12	2	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0007	998	11	11	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0008	998	7	0	4	0	3	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/1	a0009	998	7	0	5	0	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0010	998	5	0	0	5	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0011	998	3	3	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0012	998	2	2	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0013	998	2	0	0	2	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0014	998	2	0	1	0	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0015	998	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0016	998	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0017	998	1	0	0	0	1	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0018	998	1	0	1	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0019	998	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0020	998	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0021	998	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0022	998	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0023	998	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0024	998	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0025	248	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0026	998	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	a0027	998	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT4_chr11_364499_387117	1/1	a0001	1039	85	13	31	22	5	12	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0002	1039	64	17	15	21	3	8	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0003	974	5	1	2	0	0	2	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0004	1039	5	4	1	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0005	974	3	2	0	1	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0006	1039	3	2	1	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0007	1039	2	2	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0008	1039	1	0	0	1	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0009	1039	1	0	0	1	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0010	1039	1	0	0	1	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0011	1039	1	0	1	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0012	1031	1	0	0	0	0	1	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0013	1039	1	0	1	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0014	1039	1	0	1	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0015	1044	1	1	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0016	1039	1	1	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0017	1039	1	1	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0018	974	1	1	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0019	1039	1	1	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0020	1039	1	1	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0021	1039	1	0	0	1	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0022	969	1	0	0	0	0	1	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0023	76	1	0	1	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	a0024	1039	1	1	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALT1_chr9_33105642_33172336	1/1	a0001	398	360	88	68	147	13	42	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	a0002	398	2	2	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	a0003	398	1	0	0	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	a0004	398	1	0	0	0	1	0	copy fasta	B4GALT1	chr9	33105642	33172336