JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SOWAHB_chr4_76889152_76903144	0/0	a0008	793	3	3	0	0	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	a0009	794	1	1	0	0	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	a0010	593	1	0	0	1	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	a0011	788	1	0	0	0	0	1	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	a0012	316	1	0	0	1	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	a0013	709	1	0	0	0	1	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	a0014	793	1	0	0	1	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHC_chr2_109609364_109623990	1/1	a0001	525	413	80	75	195	14	47	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	a0002	525	9	8	1	0	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	a0003	525	7	6	1	0	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	a0004	525	1	0	1	0	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	a0005	525	1	0	0	1	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	a0006	519	1	0	0	0	0	1	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHD_chrX_119753588_119765202	1/1	a0001	315	302	72	56	125	13	34	copy fasta	SOWAHD	chrX	119753588	119765202
SOWAHD_chrX_119753588_119765202	0/0	a0002	315	17	6	1	10	0	0	copy fasta	SOWAHD	chrX	119753588	119765202
SOWAHD_chrX_119753588_119765202	0/0	a0003	302	2	0	0	2	0	0	copy fasta	SOWAHD	chrX	119753588	119765202
SOWAHD_chrX_119753588_119765202	0/0	a0004	37	1	0	0	1	0	0	copy fasta	SOWAHD	chrX	119753588	119765202
SOX10_chr22_37967312_37989555	1/1	a0001	466	332	90	59	131	10	40	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	a0002	466	2	0	0	2	0	0	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	a0003	466	1	0	0	1	0	0	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	a0004	466	1	0	1	0	0	0	copy fasta	SOX10	chr22	37967312	37989555
SOX11_chr2_5687384_5706385	1/1	a0001	441	434	96	82	186	18	50	copy fasta	SOX11	chr2	5687384	5706385
SOX12_chr20_320552_335224	1/1	a0001	315	394	87	68	177	16	44	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	a0002	315	3	3	0	0	0	0	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	a0003	315	2	2	0	0	0	0	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	a0004	293	1	0	0	1	0	0	copy fasta	SOX12	chr20	320552	335224
SOX13_chr1_204068115_204132743	1/1	a0001	622	348	77	62	155	16	36	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	a0002	622	5	5	0	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	a0003	622	4	4	0	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	a0004	622	2	2	0	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	a0005	622	1	0	1	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	a0006	622	1	0	1	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	a0007	622	1	0	1	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	a0008	622	1	0	1	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	a0009	622	1	0	0	1	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX14_chr3_137759315_137771334	1/1	a0001	240	394	90	71	175	14	42	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	a0002	240	2	2	0	0	0	0	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	a0003	240	1	0	1	0	0	0	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	a0004	240	1	0	0	1	0	0	copy fasta	SOX14	chr3	137759315	137771334
SOX15_chr17_7583178_7595094	1/1	a0001	233	416	94	79	187	16	38	copy fasta	SOX15	chr17	7583178	7595094
SOX15_chr17_7583178_7595094	0/0	a0002	233	1	0	0	1	0	0	copy fasta	SOX15	chr17	7583178	7595094
SOX15_chr17_7583178_7595094	0/0	a0003	233	1	0	1	0	0	0	copy fasta	SOX15	chr17	7583178	7595094
SOX17_chr8_54452935_54465892	1/1	a0001	414	410	95	66	196	10	41	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	a0002	414	5	0	5	0	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	a0003	414	2	0	0	2	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	a0004	418	2	1	1	0	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	a0005	414	1	1	0	0	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	a0006	414	1	1	0	0	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	a0007	414	1	0	0	0	0	1	copy fasta	SOX17	chr8	54452935	54465892
SOX18_chr20_64042582_64054639	1/1	a0001	384	347	92	74	119	15	45	copy fasta	SOX18	chr20	64042582	64054639