JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SOX5_chr12_23524504_23954670	1/1	a0001	763	212	80	48	46	6	30	copy fasta	SOX5	chr12	23524504	23954670
SOX6_chr11_15961449_16361546	1/1	a0001	828	217	58	42	95	2	18	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	a0002	828	1	0	0	1	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX7_chr8_10718768_10735511	1/1	a0001	388	416	99	72	175	18	50	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	a0002	388	40	0	9	31	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	a0003	388	2	0	2	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	a0004	388	1	1	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	a0005	388	1	0	1	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	a0006	388	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	a0007	388	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX8_chr16_976770_991979	0/0	a0000	0	12	1	2	8	0	1	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	1/1	a0001	446	410	95	81	172	16	44	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	a0002	443	3	0	1	2	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	a0003	446	3	0	0	3	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	a0004	446	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	a0005	446	1	0	0	0	0	1	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	a0006	446	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	a0007	446	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	a0008	446	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	a0009	446	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX9_chr17_72116020_72131416	0/0	a0000	0	11	2	2	5	0	2	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	1/1	a0001	509	388	94	72	166	14	40	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	a0002	502	2	0	2	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	a0003	503	1	0	0	1	0	0	copy fasta	SOX9	chr17	72116020	72131416
SP100_chr2_230411201_230550606	0/0	a0001	885	147	55	33	39	4	16	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	1/1	a0002	885	86	23	13	43	1	4	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	a0003	885	37	5	16	3	7	6	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	a0004	885	7	0	0	1	2	4	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	a0005	885	5	4	1	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	a0006	885	2	0	1	1	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	a0007	885	2	0	0	0	0	2	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	a0008	885	1	1	0	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	a0009	885	1	0	0	1	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	a0010	885	1	0	0	1	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	a0011	885	1	0	0	1	0	0	copy fasta	SP100	chr2	230411201	230550606
SP110_chr2_230160186_230224984	0/1	a0001	713	173	49	18	86	5	14	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0002	713	51	7	15	23	3	3	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0003	713	37	1	9	12	4	11	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0004	713	30	7	3	18	0	2	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0005	713	22	1	0	21	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0006	713	16	1	2	8	1	4	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0007	713	10	9	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0008	713	8	7	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0009	713	8	4	3	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0010	713	8	1	1	2	1	3	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0011	713	7	1	4	0	0	2	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0012	713	7	1	4	0	0	2	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0013	713	5	5	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0014	713	5	0	0	5	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0015	713	5	0	2	0	1	2	copy fasta	SP110	chr2	230160186	230224984