JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPACA3_chr17_32986847_33002877	1/1	a0001	215	458	86	83	221	16	50	copy fasta	SPACA3	chr17	32986847	33002877
SPACA3_chr17_32986847_33002877	0/0	a0002	215	7	6	1	0	0	0	copy fasta	SPACA3	chr17	32986847	33002877
SPACA3_chr17_32986847_33002877	0/0	a0003	215	2	0	2	0	0	0	copy fasta	SPACA3	chr17	32986847	33002877
SPACA3_chr17_32986847_33002877	0/0	a0004	215	1	1	0	0	0	0	copy fasta	SPACA3	chr17	32986847	33002877
SPACA3_chr17_32986847_33002877	0/0	a0005	215	1	0	0	1	0	0	copy fasta	SPACA3	chr17	32986847	33002877
SPACA3_chr17_32986847_33002877	0/0	a0006	215	1	1	0	0	0	0	copy fasta	SPACA3	chr17	32986847	33002877
SPACA4_chr19_48601742_48612714	0/0	a0001	124	390	91	79	158	14	48	copy fasta	SPACA4	chr19	48601742	48612714
SPACA4_chr19_48601742_48612714	0/0	a0002	124	1	0	1	0	0	0	copy fasta	SPACA4	chr19	48601742	48612714
SPACA4_chr19_48601742_48612714	0/0	a0003	124	1	1	0	0	0	0	copy fasta	SPACA4	chr19	48601742	48612714
SPACA5B_chrX_48125626_48137620	0/0	a0000	0	1	0	0	1	0	0	copy fasta	SPACA5B	chrX	48125626	48137620
SPACA5B_chrX_48125626_48137620	0/0	a0001	159	311	72	52	145	8	34	copy fasta	SPACA5B	chrX	48125626	48137620
SPACA5_chrX_48001988_48014733	0/0	a0001	159	290	76	51	118	11	34	copy fasta	SPACA5	chrX	48001988	48014733
SPACA5_chrX_48001988_48014733	0/0	a0002	68	2	0	1	1	0	0	copy fasta	SPACA5	chrX	48001988	48014733
SPACA6_chr19_51688330_51710190	1/1	a0001	324	400	86	76	177	16	43	copy fasta	SPACA6	chr19	51688330	51710190
SPACA6_chr19_51688330_51710190	0/0	a0002	324	10	5	2	2	0	1	copy fasta	SPACA6	chr19	51688330	51710190
SPACA6_chr19_51688330_51710190	0/0	a0003	324	2	1	1	0	0	0	copy fasta	SPACA6	chr19	51688330	51710190
SPACA6_chr19_51688330_51710190	0/0	a0004	324	1	1	0	0	0	0	copy fasta	SPACA6	chr19	51688330	51710190
SPACA6_chr19_51688330_51710190	0/0	a0005	324	1	0	0	1	0	0	copy fasta	SPACA6	chr19	51688330	51710190
SPACA6_chr19_51688330_51710190	0/0	a0006	324	1	1	0	0	0	0	copy fasta	SPACA6	chr19	51688330	51710190
SPACA6_chr19_51688330_51710190	0/0	a0007	282	1	0	1	0	0	0	copy fasta	SPACA6	chr19	51688330	51710190
SPACA7_chr13_112371355_112439689	0/0	a0001	195	267	73	41	120	7	26	copy fasta	SPACA7	chr13	112371355	112439689
SPACA7_chr13_112371355_112439689	0/1	a0002	195	122	19	26	60	6	10	copy fasta	SPACA7	chr13	112371355	112439689
SPACA7_chr13_112371355_112439689	0/0	a0003	195	1	0	1	0	0	0	copy fasta	SPACA7	chr13	112371355	112439689
SPACA7_chr13_112371355_112439689	0/0	a0004	195	1	0	0	0	1	0	copy fasta	SPACA7	chr13	112371355	112439689
SPACA9_chr9_132873898_132895030	1/1	a0001	222	421	96	79	186	16	42	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	a0002	222	5	0	0	5	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	a0003	170	1	0	0	1	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	a0004	222	1	1	0	0	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	a0005	222	1	1	0	0	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	a0006	222	1	0	1	0	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACDR_chr7_100451620_100469260	1/1	a0001	206	350	94	54	148	14	38	copy fasta	SPACDR	chr7	100451620	100469260
SPADH_chr10_122667850_122684494	1/1	a0001	137	353	87	65	155	11	33	copy fasta	SPADH	chr10	122667850	122684494
SPADH_chr10_122667850_122684494	0/0	a0002	137	38	0	5	31	0	2	copy fasta	SPADH	chr10	122667850	122684494
SPADH_chr10_122667850_122684494	0/0	a0003	137	21	6	8	0	1	6	copy fasta	SPADH	chr10	122667850	122684494
SPADH_chr10_122667850_122684494	0/0	a0004	137	1	1	0	0	0	0	copy fasta	SPADH	chr10	122667850	122684494
SPADH_chr10_122667850_122684494	0/0	a0005	137	1	0	0	0	0	1	copy fasta	SPADH	chr10	122667850	122684494
SPAG11A_chr8_7843008_7865943	0/0	a0001	133	56	16	5	26	5	4	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	a0002	133	42	2	12	23	2	3	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	a0003	133	13	0	5	6	1	1	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	1/0	a0004	133	7	6	0	0	0	0	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	a0005	133	7	1	4	1	1	0	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	a0006	133	2	2	0	0	0	0	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	a0007	133	1	1	0	0	0	0	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	a0008	133	1	1	0	0	0	0	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	a0009	133	1	1	0	0	0	0	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	a0010	133	1	0	0	0	1	0	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11B_chr8_7445603_7468542	0/0	a0001	133	97	12	16	54	6	9	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG11B_chr8_7445603_7468542	0/1	a0002	133	82	17	11	39	2	12	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG11B_chr8_7445603_7468542	0/0	a0003	133	13	2	3	8	0	0	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG11B_chr8_7445603_7468542	0/0	a0004	133	5	0	2	2	0	1	copy fasta	SPAG11B	chr8	7445603	7468542