JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPAG1_chr8_100153587_100246904	0/0	a0007	926	2	0	2	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	a0008	926	2	2	0	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	a0009	927	1	1	0	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	a0010	926	1	1	0	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	a0011	926	1	1	0	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	a0012	926	1	1	0	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	a0013	927	1	0	0	1	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	a0014	926	1	1	0	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	a0015	926	1	1	0	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG4_chr20_35610829_35626094	1/1	a0001	437	315	83	55	118	16	41	copy fasta	SPAG4	chr20	35610829	35626094
SPAG4_chr20_35610829_35626094	0/0	a0002	437	2	0	1	0	0	1	copy fasta	SPAG4	chr20	35610829	35626094
SPAG4_chr20_35610829_35626094	0/0	a0003	437	1	1	0	0	0	0	copy fasta	SPAG4	chr20	35610829	35626094
SPAG4_chr20_35610829_35626094	0/0	a0004	437	1	1	0	0	0	0	copy fasta	SPAG4	chr20	35610829	35626094
SPAG4_chr20_35610829_35626094	0/0	a0005	437	1	1	0	0	0	0	copy fasta	SPAG4	chr20	35610829	35626094
SPAG5_chr17_28572574_28604025	1/1	a0001	1193	312	82	57	133	7	31	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	a0002	1193	3	0	0	3	0	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	a0003	1172	2	0	0	0	0	2	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	a0004	1193	2	0	2	0	0	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	a0005	1193	2	2	0	0	0	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	a0006	1193	2	0	0	2	0	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	a0007	1193	1	0	1	0	0	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	a0008	1193	1	0	0	0	0	1	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	a0009	1193	1	0	0	0	1	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	a0010	1193	1	0	0	1	0	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	a0011	1193	1	1	0	0	0	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	a0012	1193	1	1	0	0	0	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	a0013	1193	1	0	0	1	0	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG6_chr10_22340496_22422610	1/1	a0001	509	81	29	22	14	6	8	copy fasta	SPAG6	chr10	22340496	22422610
SPAG6_chr10_22340496_22422610	0/0	a0002	509	61	49	10	0	0	2	copy fasta	SPAG6	chr10	22340496	22422610
SPAG7_chr17_4954226_4972817	1/1	a0001	227	410	77	70	207	16	38	copy fasta	SPAG7	chr17	4954226	4972817
SPAG7_chr17_4954226_4972817	0/0	a0002	227	11	11	0	0	0	0	copy fasta	SPAG7	chr17	4954226	4972817
SPAG7_chr17_4954226_4972817	0/0	a0003	227	2	0	0	0	0	2	copy fasta	SPAG7	chr17	4954226	4972817
SPAG7_chr17_4954226_4972817	0/0	a0004	227	1	0	0	1	0	0	copy fasta	SPAG7	chr17	4954226	4972817
SPAG8_chr9_35804795_35817262	1/1	a0001	485	246	38	47	120	10	29	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	a0002	481	127	36	24	57	2	8	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	a0003	15	14	0	0	14	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	a0004	485	10	9	0	0	0	1	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	a0005	481	9	0	0	9	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	a0006	481	8	7	1	0	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	a0007	485	2	0	2	0	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	a0008	481	1	0	1	0	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	a0009	481	1	1	0	0	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	a0010	485	1	0	1	0	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	a0011	481	1	1	0	0	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG9_chr17_50957174_51125868	1/1	a0001	1321	260	64	62	92	14	26	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	a0002	1321	28	24	2	0	0	2	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	a0003	1321	1	1	0	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	a0004	1321	1	0	0	1	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	a0005	1321	1	1	0	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	a0006	1321	1	0	0	1	0	0	copy fasta	SPAG9	chr17	50957174	51125868