JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPAM1_chr7_123920241_123965046	1/1	a0001	509	377	93	64	162	12	44	copy fasta	SPAM1	chr7	123920241	123965046
SPAM1_chr7_123920241_123965046	0/0	a0002	509	5	4	0	0	0	1	copy fasta	SPAM1	chr7	123920241	123965046
SPAM1_chr7_123920241_123965046	0/0	a0003	509	2	0	2	0	0	0	copy fasta	SPAM1	chr7	123920241	123965046
SPAM1_chr7_123920241_123965046	0/0	a0004	509	2	0	0	2	0	0	copy fasta	SPAM1	chr7	123920241	123965046
SPAM1_chr7_123920241_123965046	0/0	a0005	509	1	1	0	0	0	0	copy fasta	SPAM1	chr7	123920241	123965046
SPAM1_chr7_123920241_123965046	0/0	a0006	509	1	0	0	0	0	1	copy fasta	SPAM1	chr7	123920241	123965046
SPANXA1_chrX_141578674_141589738	0/0	a0001	97	102	18	18	58	0	8	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	a0002	97	26	12	3	9	0	2	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	a0003	97	22	7	1	12	0	2	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	a0004	97	2	2	0	0	0	0	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	a0005	97	1	0	0	1	0	0	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	a0006	97	1	1	0	0	0	0	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	a0007	97	1	1	0	0	0	0	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	a0008	97	1	1	0	0	0	0	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA1_chrX_141578674_141589738	0/0	a0009	97	1	1	0	0	0	0	copy fasta	SPANXA1	chrX	141578674	141589738
SPANXA2_chrX_141584708_141595762	0/0	a0000	0	2	0	0	2	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	a0001	97	115	15	15	75	2	8	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	a0002	97	30	7	2	18	0	3	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	a0003	97	21	9	4	7	0	1	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	a0004	97	3	3	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	a0005	103	2	2	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	a0006	15	1	0	0	1	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	a0007	39	1	0	0	1	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	a0008	97	1	1	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	a0009	97	1	0	0	0	0	1	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	a0010	72	1	1	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	a0011	92	1	0	1	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	a0012	97	1	1	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	a0013	97	1	1	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	a0014	16	1	0	0	1	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	a0015	97	1	0	0	1	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	a0016	103	1	1	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXA2_chrX_141584708_141595762	0/0	a0017	103	1	1	0	0	0	0	copy fasta	SPANXA2	chrX	141584708	141595762
SPANXB1_chrX_140997594_141008706	0/0	a0001	103	186	31	39	89	6	21	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	1/1	a0002	103	102	25	20	43	5	7	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	a0003	103	3	3	0	0	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	a0004	97	1	0	0	1	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	a0005	97	1	0	0	0	0	1	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	a0006	23	1	0	0	1	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	a0007	103	1	0	1	0	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	a0008	103	1	1	0	0	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	a0009	103	1	1	0	0	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	a0010	103	1	0	0	0	0	1	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	a0011	103	1	0	0	1	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	a0012	103	1	1	0	0	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXB1_chrX_140997594_141008706	0/0	a0013	100	1	0	0	1	0	0	copy fasta	SPANXB1	chrX	140997594	141008706
SPANXC_chrX_141236463_141247517	0/0	a0001	97	173	13	33	106	5	16	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0002	97	63	23	10	18	4	8	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0003	97	32	1	3	24	2	2	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0004	97	17	14	1	0	0	2	copy fasta	SPANXC	chrX	141236463	141247517