JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPANXC_chrX_141236463_141247517	0/0	a0005	97	14	0	3	11	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0006	97	9	9	0	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0007	97	9	8	1	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0008	97	5	0	1	4	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0009	97	3	1	2	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0010	97	3	0	2	1	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0011	97	2	2	0	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0012	97	2	2	0	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0013	97	2	0	0	2	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0014	97	1	1	0	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0015	97	1	0	1	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0016	97	1	0	1	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0017	97	1	0	0	0	0	1	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0018	103	1	1	0	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0019	97	1	1	0	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0020	97	1	1	0	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0021	97	1	0	0	0	0	1	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0022	103	1	1	0	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	a0023	103	1	0	0	1	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXD_chrX_141692411_141703739	0/0	a0001	97	287	52	54	142	11	28	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	a0002	97	10	5	2	3	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	a0003	97	8	6	2	0	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	a0004	97	7	4	1	2	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	a0005	97	6	6	0	0	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	a0006	97	5	1	2	0	0	2	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	a0007	97	5	4	0	1	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	a0008	97	2	2	0	0	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	a0009	97	1	0	1	0	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	a0010	97	1	0	0	1	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	a0011	97	1	0	0	1	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	a0012	25	1	0	0	1	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXN1_chrX_145242503_145261208	1/1	a0001	72	333	75	66	143	13	34	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN1_chrX_145242503_145261208	0/0	a0002	72	1	1	0	0	0	0	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN2_chrX_143706955_143725752	1/1	a0001	180	319	68	52	153	10	34	copy fasta	SPANXN2	chrX	143706955	143725752
SPANXN2_chrX_143706955_143725752	0/0	a0002	180	13	10	3	0	0	0	copy fasta	SPANXN2	chrX	143706955	143725752
SPANXN2_chrX_143706955_143725752	0/0	a0003	34	1	0	1	0	0	0	copy fasta	SPANXN2	chrX	143706955	143725752
SPANXN2_chrX_143706955_143725752	0/0	a0004	167	1	0	0	1	0	0	copy fasta	SPANXN2	chrX	143706955	143725752
SPANXN2_chrX_143706955_143725752	0/0	a0005	92	1	0	0	1	0	0	copy fasta	SPANXN2	chrX	143706955	143725752
SPANXN2_chrX_143706955_143725752	0/0	a0006	180	1	0	0	1	0	0	copy fasta	SPANXN2	chrX	143706955	143725752
SPANXN3_chrX_143503735_143522475	0/1	a0001	141	285	45	57	145	12	25	copy fasta	SPANXN3	chrX	143503735	143522475
SPANXN3_chrX_143503735_143522475	1/0	a0002	141	51	20	7	15	1	7	copy fasta	SPANXN3	chrX	143503735	143522475
SPANXN3_chrX_143503735_143522475	0/0	a0003	141	8	7	1	0	0	0	copy fasta	SPANXN3	chrX	143503735	143522475
SPANXN3_chrX_143503735_143522475	0/0	a0004	141	4	4	0	0	0	0	copy fasta	SPANXN3	chrX	143503735	143522475
SPANXN3_chrX_143503735_143522475	0/0	a0005	70	1	0	0	1	0	0	copy fasta	SPANXN3	chrX	143503735	143522475
SPANXN4_chrX_143020928_143039311	1/1	a0001	99	322	68	56	155	9	32	copy fasta	SPANXN4	chrX	143020928	143039311
SPANXN4_chrX_143020928_143039311	0/0	a0002	99	13	11	2	0	0	0	copy fasta	SPANXN4	chrX	143020928	143039311
SPANXN4_chrX_143020928_143039311	0/0	a0003	40	6	0	2	0	4	0	copy fasta	SPANXN4	chrX	143020928	143039311
SPANXN4_chrX_143020928_143039311	0/0	a0004	40	1	1	0	0	0	0	copy fasta	SPANXN4	chrX	143020928	143039311
SPANXN4_chrX_143020928_143039311	0/0	a0005	99	1	0	0	1	0	0	copy fasta	SPANXN4	chrX	143020928	143039311
SPANXN5_chrX_52791144_52802427	1/1	a0001	72	303	80	44	140	11	26	copy fasta	SPANXN5	chrX	52791144	52802427