JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPARCL1_chr4_87468335_87534376	1/1	a0001	664	180	12	31	106	12	17	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	a0002	664	119	35	16	50	4	14	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	a0003	664	65	32	11	18	2	2	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	a0004	664	14	14	0	0	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	a0005	664	4	0	0	4	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	a0006	664	3	3	0	0	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	a0007	664	1	0	0	1	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	a0008	664	1	1	0	0	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	a0009	664	1	0	0	1	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	a0010	664	1	0	0	0	0	1	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	a0011	664	1	1	0	0	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARC_chr5_151656096_151691915	1/1	a0001	303	427	85	77	201	16	46	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	a0002	303	10	8	2	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	a0003	303	3	0	1	0	0	2	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	a0004	303	1	0	0	1	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	a0005	303	1	1	0	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPART_chr13_36296638_36351394	0/0	a0000	0	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	1/1	a0001	666	371	84	74	156	14	41	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	a0002	666	1	0	0	0	0	1	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	a0003	666	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	a0004	666	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	a0005	666	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	a0006	666	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	a0007	666	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPAST_chr2_32058556_32162637	1/1	a0001	616	341	85	70	142	12	30	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	a0002	616	1	1	0	0	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPATA12_chr3_57055664_57080432	1/1	a0001	190	433	97	73	199	15	47	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	a0002	190	6	0	3	1	1	1	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	a0003	190	1	1	0	0	0	0	copy fasta	SPATA12	chr3	57055664	57080432
SPATA13_chr13_24155720_24312069	1/1	a0001	1277	289	51	50	143	11	32	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0002	1277	25	21	4	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0003	1277	7	1	3	3	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0004	1277	7	2	4	0	1	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0005	1277	4	4	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0006	1277	3	1	1	0	1	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0007	1277	3	0	2	0	0	1	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0008	1277	3	0	0	2	0	1	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0009	1277	2	2	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0010	1277	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0011	1277	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0012	1277	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0013	1277	1	0	0	1	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0014	1277	1	0	0	0	1	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0015	1277	1	0	0	1	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0016	1277	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0017	1277	1	0	1	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0018	1277	1	0	1	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0019	1277	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0020	1277	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	a0021	1277	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069