JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPATA13_chr13_24155720_24312069	0/0	a0022	1277	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA16_chr3_172884357_173146235	0/0	a0000	0	2	2	0	0	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	1/1	a0001	569	87	17	26	25	2	15	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	a0002	569	56	44	5	2	0	5	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	a0003	569	34	1	10	16	0	7	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	a0004	569	13	11	2	0	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	a0005	569	3	3	0	0	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	a0006	569	1	0	1	0	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	a0007	569	1	0	0	0	0	1	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	a0008	569	1	0	0	1	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	a0009	569	1	0	1	0	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	a0010	569	1	0	1	0	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA17_chr1_217626344_217876696	1/1	a0001	361	242	77	43	83	12	25	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	a0002	361	5	0	0	4	0	1	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	a0003	361	3	3	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	a0004	361	1	0	1	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	a0005	361	1	0	0	1	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA18_chr4_52046304_52102299	1/1	a0001	538	196	61	22	84	7	20	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	a0002	538	98	8	22	50	9	9	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	a0003	538	3	2	0	0	0	1	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	a0004	538	3	0	0	3	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	a0005	538	2	0	0	2	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	a0006	538	2	2	0	0	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	a0007	538	1	0	0	1	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	a0008	497	1	0	0	1	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	a0009	538	1	0	0	1	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	a0010	538	1	1	0	0	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA19_chr11_133835631_133850513	1/1	a0001	167	232	86	48	59	7	30	copy fasta	SPATA19	chr11	133835631	133850513
SPATA19_chr11_133835631_133850513	0/0	a0002	167	111	8	26	58	6	13	copy fasta	SPATA19	chr11	133835631	133850513
SPATA19_chr11_133835631_133850513	0/0	a0003	167	18	0	0	17	0	1	copy fasta	SPATA19	chr11	133835631	133850513
SPATA19_chr11_133835631_133850513	0/0	a0004	85	1	0	0	0	1	0	copy fasta	SPATA19	chr11	133835631	133850513
SPATA1_chr1_84501386_84572379	1/1	a0001	440	185	39	34	87	8	15	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	a0002	440	84	17	12	45	1	9	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	a0003	440	21	11	6	0	1	3	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	a0004	440	19	19	0	0	0	0	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	a0005	440	1	0	0	0	0	1	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	a0006	440	1	0	1	0	0	0	copy fasta	SPATA1	chr1	84501386	84572379
SPATA1_chr1_84501386_84572379	0/0	a0007	440	1	0	1	0	0	0	copy fasta	SPATA1	chr1	84501386	84572379
SPATA20_chr17_50542174_50560852	0/1	a0001	802	149	21	31	67	6	23	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	a0002	802	97	58	16	12	5	6	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	1/0	a0003	802	37	0	16	8	3	9	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	a0004	802	22	9	6	5	1	1	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	a0005	802	10	0	3	0	2	5	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	a0006	802	3	0	0	3	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	a0007	802	3	1	2	0	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	a0008	802	2	0	1	0	1	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	a0009	802	2	0	0	2	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	a0010	802	1	1	0	0	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	a0011	802	1	1	0	0	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	a0012	802	1	0	1	0	0	0	copy fasta	SPATA20	chr17	50542174	50560852