JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPATA20_chr17_50542174_50560852	0/0	a0013	802	1	0	0	1	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	a0014	802	1	0	0	1	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	a0015	802	1	0	0	1	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	a0016	802	1	1	0	0	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	a0017	802	1	1	0	0	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA20_chr17_50542174_50560852	0/0	a0018	802	1	1	0	0	0	0	copy fasta	SPATA20	chr17	50542174	50560852
SPATA21_chr1_16393643_16442424	1/0	a0001	469	151	45	24	66	6	9	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	a0002	469	69	17	27	7	2	16	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/1	a0003	469	64	2	13	34	3	11	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	a0004	470	23	20	3	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	a0005	469	15	0	3	11	0	1	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	a0006	466	9	0	0	9	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	a0007	469	4	0	0	0	1	3	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	a0008	469	3	0	1	1	0	1	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	a0009	470	2	0	0	0	1	1	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	a0010	470	2	2	0	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	a0011	470	2	0	2	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	a0012	469	2	0	0	0	1	1	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	a0013	469	2	2	0	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	a0014	469	1	0	1	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	a0015	469	1	0	0	0	0	1	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	a0016	470	1	1	0	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA21_chr1_16393643_16442424	0/0	a0017	469	1	1	0	0	0	0	copy fasta	SPATA21	chr1	16393643	16442424
SPATA22_chr17_3435019_3476819	1/0	a0001	363	239	64	35	110	6	23	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	a0002	363	113	22	24	57	4	6	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/1	a0003	363	32	7	0	20	1	3	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	a0004	363	31	5	15	0	3	8	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	a0005	363	1	1	0	0	0	0	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	a0006	363	1	0	0	0	0	1	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	a0007	363	1	1	0	0	0	0	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	a0008	363	1	0	0	0	0	1	copy fasta	SPATA22	chr17	3435019	3476819
SPATA22_chr17_3435019_3476819	0/0	a0009	363	1	0	0	1	0	0	copy fasta	SPATA22	chr17	3435019	3476819
SPATA24_chr5_139391767_139409089	1/1	a0001	205	335	81	62	142	14	34	copy fasta	SPATA24	chr5	139391767	139409089
SPATA24_chr5_139391767_139409089	0/0	a0002	205	1	1	0	0	0	0	copy fasta	SPATA24	chr5	139391767	139409089
SPATA25_chr20_45881491_45892622	1/1	a0001	227	339	68	54	162	16	37	copy fasta	SPATA25	chr20	45881491	45892622
SPATA25_chr20_45881491_45892622	0/0	a0002	227	58	18	5	32	0	3	copy fasta	SPATA25	chr20	45881491	45892622
SPATA25_chr20_45881491_45892622	0/0	a0003	227	6	0	6	0	0	0	copy fasta	SPATA25	chr20	45881491	45892622
SPATA25_chr20_45881491_45892622	0/0	a0004	227	1	1	0	0	0	0	copy fasta	SPATA25	chr20	45881491	45892622
SPATA25_chr20_45881491_45892622	0/0	a0005	227	1	1	0	0	0	0	copy fasta	SPATA25	chr20	45881491	45892622
SPATA25_chr20_45881491_45892622	0/0	a0006	227	1	0	1	0	0	0	copy fasta	SPATA25	chr20	45881491	45892622
SPATA2L_chr16_89691357_89706705	1/1	a0001	424	389	95	71	161	18	42	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	a0002	346	20	4	4	10	0	2	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	a0003	424	5	0	5	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	a0004	424	1	0	0	1	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	a0005	214	1	1	0	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	a0006	424	1	0	0	0	0	1	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	a0007	424	1	0	0	0	0	1	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2_chr20_49898391_49920529	1/1	a0001	520	351	88	72	133	16	40	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	a0002	520	61	1	2	58	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	a0003	520	4	4	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529