JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPATA31A3_chr9_66981304_66997550	0/0	a0049	1347	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0050	1347	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A6_chr9_42178659_42194887	0/0	a0001	1343	59	9	13	26	5	6	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/1	a0002	1343	38	3	18	9	1	6	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	1/0	a0003	1343	27	5	3	8	6	4	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0004	1343	9	0	1	8	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0005	1347	6	0	0	6	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0006	1343	5	3	0	0	0	2	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0007	1343	4	4	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0008	1343	2	2	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0009	1343	2	2	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0010	1343	2	0	0	2	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0011	1343	2	2	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0012	1343	2	0	2	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0013	1343	2	1	0	0	1	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0014	1343	1	1	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0015	1343	1	1	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0016	1347	1	0	0	0	0	1	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0017	1347	1	0	0	1	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0018	1347	1	0	0	1	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0019	1343	1	1	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0020	1343	1	0	1	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0021	1343	1	0	1	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0022	1343	1	0	0	0	0	1	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0023	1343	1	0	1	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0024	1343	1	0	0	0	1	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0025	1343	1	0	0	0	0	1	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0026	1343	1	0	0	1	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0027	1343	1	1	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0028	1343	1	1	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0029	1343	1	1	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0030	1343	1	0	0	1	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0031	1343	1	0	1	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0032	1343	1	0	0	1	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0033	1347	1	1	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0034	1347	1	0	1	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	a0035	1343	1	0	0	0	0	1	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A7_chr9_61185036_61201280	0/0	a0001	1347	68	12	25	28	0	3	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/1	a0002	1347	48	1	9	29	3	5	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0003	1347	16	2	2	11	1	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0004	1347	14	1	1	7	0	5	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0005	1347	12	0	0	12	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0006	1347	12	0	5	7	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0007	1347	10	1	4	0	0	5	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0008	1347	4	3	1	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0009	1347	3	0	2	0	0	1	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0010	1347	3	2	1	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0011	1347	2	0	0	2	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0012	1347	2	0	2	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0013	1347	2	2	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280